commit 5d0c5cf1e15fca804dfe5ce2e5d8b6c19b1dc11a
Author: Jan Rękorajski <[email protected]>
Date: Tue Nov 26 14:38:08 2013 +0100
- initial revision
R-affxparser.spec | 56 +++++++++++++++++++++++++++++++++++++++++++++++++++++++
1 file changed, 56 insertions(+)
---
diff --git a/R-affxparser.spec b/R-affxparser.spec
new file mode 100644
index 0000000..7af6117
--- /dev/null
+++ b/R-affxparser.spec
@@ -0,0 +1,56 @@
+%define packname affxparser
+
+Summary: Affymetrix File Parsing SDK
+Name: R-%{packname}
+Version: 1.34.0
+Release: 1
+License: LGPL v2+
+Group: Applications/Engineering
+Source0:
http://bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
+# Source0-md5: dbcd64c4d496799d932af88b54eb3881
+URL:
http://bioconductor.org/packages/release/bioc/html/affxparser.html
+BuildRequires: R
+BuildRequires: texlive-latex
+Requires: R
+BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
+
+%description
+Package for parsing Affymetrix files (CDF, CEL, CHP, BPMAP, BAR).
+It provides methods for fast and memory efficient parsing of
+Affymetrix files using the Affymetrix' Fusion SDK. Both ASCII- and
+binary-based files are supported. Currently, there are methods for
+reading chip definition file (CDF) and a cell intensity file (CEL).
+These files can be read either in full or in part. For example,
+probe signals from a few probesets can be extracted very quickly
+from a set of CEL files into a convenient list structure.
+
+%prep
+%setup -q -c -n %{packname}
+
+%build
+
+%install
+rm -rf $RPM_BUILD_ROOT
+install -d $RPM_BUILD_ROOT%{_libdir}/R/library
+
+R CMD INSTALL %{packname} -l $RPM_BUILD_ROOT%{_libdir}/R/library
+
+%clean
+rm -rf $RPM_BUILD_ROOT
+
+%files
+%defattr(644,root,root,755)
+%dir %{_libdir}/R/library/%{packname}
+%doc %{_libdir}/R/library/%{packname}/html
+%doc %{_libdir}/R/library/%{packname}/DESCRIPTION
+%doc %{_libdir}/R/library/%{packname}/NEWS
+%{_libdir}/R/library/%{packname}/INDEX
+%{_libdir}/R/library/%{packname}/NAMESPACE
+%{_libdir}/R/library/%{packname}/Meta
+%{_libdir}/R/library/%{packname}/R
+%{_libdir}/R/library/%{packname}/help
+%{_libdir}/R/library/%{packname}/libs
+%{_libdir}/R/library/%{packname}/extras
+%{_libdir}/R/library/%{packname}/info
+%{_libdir}/R/library/%{packname}/testscripts
+
================================================================
---- gitweb:
http://git.pld-linux.org/gitweb.cgi/packages/R-affxparser.git/commitdiff/5d0c5cf1e15fca804dfe5ce2e5d8b6c19b1dc11a
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