Did you check the permissions of the ~/Desktop folder? That might help
explain some eccentric behavior.

BTW, in the offending terminal program, what output do the `alias'  and
`wheris ls' commands give? It's a long shot, but your ls command might be
getting aliased in such a way that it doesn't perform correctly under normal
usage circumstances.

On Sun, Dec 13, 2009 at 9:15 PM, John Jason Jordan <[email protected]>wrote:

> On Sun, 13 Dec 2009 20:53:49 -0800
> John Jason Jordan <[email protected]> dijo:
>
> >A corrupted filesystem would certainly explain the random invisible files.
> I
> >wonder if there is something stronger than fsck -f. But having said that,
> >Thunar had no problem with the "invisible" files. I wonder if I can
> install a
> >different terminal.
> >
> >I'd go off to see if I can find a Gnome/Nautilus bugtracker, except that I
> get
> >the same strange results from the command line (gnome-terminal).
> >
> >The more I investigate this the more haywire it seems.
>
> OK, I installed a different terminal. And it sees all three of the example
> files I posted earlier, using the ls command or any other command. As root
> it
> also allows me to copy them to wherever I want.
>
> It shows the permissions for the two offending files as -rw------- and for
> the
> one that Nautilus lets me copy as -rw-r--r--. The Nautilus Properties
> dialog
> box shows no differences for the permissions, but it is a GUI that does not
> display all possible information. If gnome-terminal would display the
> offending
> files it probably would have shown the differing permissions as well.
>
> I am not sure if gnome-terminal's failing to display the files is by design
> or on accident. Either way, it is wrong. If the file is there it should
> list it.
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