I'm writing a database application using the MVC design pattern so there
are three subdirectories: model/; view/; and controller/. Each
subdirectory has multiple files.

  In the project root directory I set up the repository with 'git init'.
Reading pro-git (2nd ed) I don't see how to set up each subdirectory within
the repository. Are they branches, submodules, slaves or is there another
way to define them in the root directory?

  Cluesticks desired.

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