this updates math/R to the new version 2.6.0.
comments, ok?
Index: math/R/Makefile
===================================================================
RCS file: /cvs/ports/math/R/Makefile,v
retrieving revision 1.21
diff -u -r1.21 Makefile
--- math/R/Makefile 15 Sep 2007 18:44:36 -0000 1.21
+++ math/R/Makefile 7 Oct 2007 09:32:29 -0000
@@ -3,10 +3,9 @@
SHARED_ONLY= Yes
COMMENT= clone of S, a powerful math/statistics/graphics language
-DISTNAME= R-2.5.0
-PKGNAME= ${DISTNAME}p0
-SHARED_LIBS= Rlapack 25.0 \
- Rblas 25.0
+DISTNAME= R-2.6.0
+SHARED_LIBS= Rlapack 26.0 \
+ Rblas 26.0
CATEGORIES= math
HOMEPAGE= http://www.r-project.org/
@@ -30,7 +29,7 @@
LIB_DEPENDS= jpeg.>=62::graphics/jpeg \
tk84.>=1:tk-8.4.*:x11/tk/8.4
-CONFIGURE_STYLE=gnu dest
+CONFIGURE_STYLE=gnu
MODGNU_CONFIG_GUESS_DIRS=${WRKSRC}/tools
CONFIGURE_ARGS= ${CONFIGURE_SHARED} \
--with-readline --with-tcltk \
Index: math/R/distinfo
===================================================================
RCS file: /cvs/ports/math/R/distinfo,v
retrieving revision 1.10
diff -u -r1.10 distinfo
--- math/R/distinfo 26 Apr 2007 20:26:12 -0000 1.10
+++ math/R/distinfo 7 Oct 2007 09:32:29 -0000
@@ -1,5 +1,5 @@
-MD5 (R-2.5.0.tar.gz) = uQiGY/xTnAWaz68Z1tkKaQ==
-RMD160 (R-2.5.0.tar.gz) = rhR3UoG1Oi/8WCl37sTDbGvcUE8=
-SHA1 (R-2.5.0.tar.gz) = p1u7WY1/lXrsPEvnnxgqkG+xRUE=
-SHA256 (R-2.5.0.tar.gz) = UlBMdwD4+ICJGzRiL3OkHd5m4HUqhVLSuN9chXVqju8=
-SIZE (R-2.5.0.tar.gz) = 15117375
+MD5 (R-2.6.0.tar.gz) = l+XSVCNJkllit0aUVtRXMQ==
+RMD160 (R-2.6.0.tar.gz) = VLPRg9+xWvf4Yee2KQSZiGWtGUw=
+SHA1 (R-2.6.0.tar.gz) = /1FXj8Yw5lzg4ruSsOH4MkyUkl0=
+SHA256 (R-2.6.0.tar.gz) = ipFuZTr/qDWEEZ3AiosS4w5DDe4Zo5hRNRUAPEPXkdo=
+SIZE (R-2.6.0.tar.gz) = 15447985
Index: math/R/patches/patch-configure
===================================================================
RCS file: /cvs/ports/math/R/patches/patch-configure,v
retrieving revision 1.6
diff -u -r1.6 patch-configure
--- math/R/patches/patch-configure 9 Aug 2007 22:22:17 -0000 1.6
+++ math/R/patches/patch-configure 7 Oct 2007 09:32:29 -0000
@@ -1,16 +1,16 @@
$OpenBSD: patch-configure,v 1.6 2007/08/09 22:22:17 steven Exp $
---- configure.orig Thu Aug 9 00:44:12 2007
-+++ configure Thu Aug 9 00:44:46 2007
-@@ -60699,7 +60699,7 @@ HAVE_POSIX_PRINTF!$HAVE_POSIX_PRINTF$ac_delim
- HAVE_ASPRINTF!$HAVE_ASPRINTF$ac_delim
- HAVE_SNPRINTF!$HAVE_SNPRINTF$ac_delim
- HAVE_WPRINTF!$HAVE_WPRINTF$ac_delim
+--- configure.orig Wed Sep 26 04:06:08 2007
++++ configure Sun Oct 7 10:02:32 2007
+@@ -63170,7 +63170,7 @@ LIBTHREAD!$LIBTHREAD$ac_delim
+ LTLIBTHREAD!$LTLIBTHREAD$ac_delim
+ LIBMULTITHREAD!$LIBMULTITHREAD$ac_delim
+ LTLIBMULTITHREAD!$LTLIBMULTITHREAD$ac_delim
-LIBICONV!$LIBICONV$ac_delim
+LIBICONV!$LTLIBICONV$ac_delim
LTLIBICONV!$LTLIBICONV$ac_delim
INTLBISON!$INTLBISON$ac_delim
- BUILD_INCLUDED_LIBINTL!$BUILD_INCLUDED_LIBINTL$ac_delim
-@@ -60711,7 +60711,7 @@ GENCAT!$GENCAT$ac_delim
+ GLIBC21!$GLIBC21$ac_delim
+@@ -63230,7 +63230,7 @@ GENCAT!$GENCAT$ac_delim
INTLOBJS!$INTLOBJS$ac_delim
INTL_LIBTOOL_SUFFIX_PREFIX!$INTL_LIBTOOL_SUFFIX_PREFIX$ac_delim
INTLLIBS!$INTLLIBS$ac_delim
Index: math/R/patches/patch-src_include_R_ext_eventloop_h
===================================================================
RCS file: /cvs/ports/math/R/patches/patch-src_include_R_ext_eventloop_h,v
retrieving revision 1.1
diff -u -r1.1 patch-src_include_R_ext_eventloop_h
--- math/R/patches/patch-src_include_R_ext_eventloop_h 8 Oct 2005 09:47:37
-0000 1.1
+++ math/R/patches/patch-src_include_R_ext_eventloop_h 7 Oct 2007 09:32:29
-0000
@@ -1,11 +1,11 @@
$OpenBSD: patch-src_include_R_ext_eventloop_h,v 1.1 2005/10/08 09:47:37
mbalmer Exp $
---- src/include/R_ext/eventloop.h.orig Wed Aug 10 15:00:50 2005
-+++ src/include/R_ext/eventloop.h Wed Aug 10 15:01:10 2005
-@@ -24,6 +24,7 @@
- Needed at least on FreeBSD so that fd_set is defined.
- */
- #include <sys/types.h>
-+#include <sys/time.h>
+--- src/include/R_ext/eventloop.h.orig Wed Sep 5 00:12:24 2007
++++ src/include/R_ext/eventloop.h Sun Oct 7 10:03:46 2007
+@@ -26,6 +26,7 @@
+ #endif
+ /* NOTE: Needed at least on FreeBSD so that fd_set is defined. */
+ # include <sys/types.h>
++# include <sys/time.h>
+ #endif
#ifdef __cplusplus
- extern "C" {
Index: math/R/patches/patch-src_main_CommandLineArgs_c
===================================================================
RCS file: /cvs/ports/math/R/patches/patch-src_main_CommandLineArgs_c,v
retrieving revision 1.3
diff -u -r1.3 patch-src_main_CommandLineArgs_c
--- math/R/patches/patch-src_main_CommandLineArgs_c 9 Aug 2007 22:22:17
-0000 1.3
+++ math/R/patches/patch-src_main_CommandLineArgs_c 7 Oct 2007 09:32:29
-0000
@@ -1,7 +1,7 @@
$OpenBSD: patch-src_main_CommandLineArgs_c,v 1.3 2007/08/09 22:22:17 steven
Exp $
---- src/main/CommandLineArgs.c.orig Mon Dec 4 15:48:48 2006
-+++ src/main/CommandLineArgs.c Thu Aug 9 00:44:00 2007
-@@ -197,7 +197,7 @@ R_common_command_line(int *pac, char **argv, Rstart Rp
+--- src/main/CommandLineArgs.c.orig Wed Sep 5 00:13:27 2007
++++ src/main/CommandLineArgs.c Sun Oct 7 09:58:19 2007
+@@ -196,7 +196,7 @@ R_common_command_line(int *pac, char **argv, Rstart Rp
!strcmp(*av, "-V") ||
!strcmp(*av, "-n") ||
!strcmp(*av, "-v")) {
@@ -10,7 +10,7 @@
_("WARNING: option '%s' no longer supported\n"), *av);
R_ShowMessage(msg);
}
-@@ -208,7 +208,7 @@ R_common_command_line(int *pac, char **argv, Rstart Rp
+@@ -207,7 +207,7 @@ R_common_command_line(int *pac, char **argv, Rstart Rp
}
else p = &(*av)[12];
if (p == NULL) {
@@ -19,7 +19,7 @@
_("WARNING: no value given for '%s'\n"), *av);
R_ShowMessage(msg);
break;
-@@ -216,7 +216,7 @@ R_common_command_line(int *pac, char **argv, Rstart Rp
+@@ -215,7 +215,7 @@ R_common_command_line(int *pac, char **argv, Rstart Rp
value = R_Decode2Long(p, &ierr);
if(ierr) {
if(ierr < 0)
Index: math/R/patches/patch-src_main_Rdynload_c
===================================================================
RCS file: /cvs/ports/math/R/patches/patch-src_main_Rdynload_c,v
retrieving revision 1.3
diff -u -r1.3 patch-src_main_Rdynload_c
--- math/R/patches/patch-src_main_Rdynload_c 9 Aug 2007 22:22:17 -0000
1.3
+++ math/R/patches/patch-src_main_Rdynload_c 7 Oct 2007 09:32:29 -0000
@@ -1,7 +1,7 @@
$OpenBSD: patch-src_main_Rdynload_c,v 1.3 2007/08/09 22:22:17 steven Exp $
---- src/main/Rdynload.c.orig Mon Mar 26 18:42:08 2007
-+++ src/main/Rdynload.c Thu Aug 9 00:44:00 2007
-@@ -519,7 +519,8 @@ static DllInfo* AddDLL(char *path, int asLocal, int no
+--- src/main/Rdynload.c.orig Wed Sep 5 00:13:27 2007
++++ src/main/Rdynload.c Sun Oct 7 09:58:19 2007
+@@ -533,7 +533,8 @@ static DllInfo* AddDLL(char *path, int asLocal, int no
DeleteDLL(path);
if(CountDLL == MAX_NUM_DLLS) {
@@ -11,7 +11,7 @@
return NULL;
}
-@@ -572,11 +573,12 @@ static DllInfo *R_RegisterDLL(HINSTANCE handle, const
+@@ -586,11 +587,12 @@ static DllInfo *R_RegisterDLL(HINSTANCE handle, const
dpath = (char *) malloc(strlen(path)+1);
if(dpath == NULL) {
@@ -26,7 +26,7 @@
if(R_osDynSymbol->fixPath)
R_osDynSymbol->fixPath(dpath);
-@@ -584,7 +586,7 @@ static DllInfo *R_RegisterDLL(HINSTANCE handle, const
+@@ -598,7 +600,7 @@ static DllInfo *R_RegisterDLL(HINSTANCE handle, const
/* keep only basename from path */
p = Rf_strrchr(dpath, FILESEP[0]);
if(!p) p = dpath; else p++;
@@ -35,7 +35,7 @@
else error(_("DLLname '%s' is too long"), p);
/* remove SHLIB_EXT if present */
-@@ -606,14 +608,15 @@ addDLL(char *dpath, char *DLLname, HINSTANCE handle)
+@@ -620,14 +622,15 @@ addDLL(char *dpath, char *DLLname, HINSTANCE handle)
int ans = CountDLL;
char *name = (char *) malloc(strlen(DLLname)+1);
if(name == NULL) {
Index: math/R/patches/patch-src_main_connections_c
===================================================================
RCS file: /cvs/ports/math/R/patches/patch-src_main_connections_c,v
retrieving revision 1.5
diff -u -r1.5 patch-src_main_connections_c
--- math/R/patches/patch-src_main_connections_c 9 Aug 2007 22:22:17 -0000
1.5
+++ math/R/patches/patch-src_main_connections_c 7 Oct 2007 09:32:29 -0000
@@ -1,7 +1,7 @@
$OpenBSD: patch-src_main_connections_c,v 1.5 2007/08/09 22:22:17 steven Exp $
---- src/main/connections.c.orig Mon Apr 9 04:05:02 2007
-+++ src/main/connections.c Thu Aug 9 00:44:00 2007
-@@ -1900,7 +1900,7 @@ static int text_vfprintf(Rconnection con, const char *
+--- src/main/connections.c.orig Wed Sep 5 00:13:27 2007
++++ src/main/connections.c Sun Oct 7 09:58:19 2007
+@@ -1964,7 +1964,7 @@ static int text_vfprintf(Rconnection con, const char *
b = R_alloc(res + already + 1, sizeof(char));
strcpy(b, this->lastline);
p = b + already;
@@ -10,7 +10,7 @@
} else if(res < 0) { /* just a failure indication -- e.g. Windows */
#define NBUFSIZE (already + 100*BUFSIZE)
usedRalloc = TRUE;
-@@ -3817,7 +3817,8 @@ static Rboolean gzcon_open(Rconnection con)
+@@ -3888,7 +3888,8 @@ static Rboolean gzcon_open(Rconnection con)
if(con->canread) {
/* read header */
Index: math/R/patches/patch-src_main_gram_y
===================================================================
RCS file: /cvs/ports/math/R/patches/patch-src_main_gram_y,v
retrieving revision 1.3
diff -u -r1.3 patch-src_main_gram_y
--- math/R/patches/patch-src_main_gram_y 9 Aug 2007 22:22:17 -0000
1.3
+++ math/R/patches/patch-src_main_gram_y 7 Oct 2007 09:32:29 -0000
@@ -1,7 +1,7 @@
$OpenBSD: patch-src_main_gram_y,v 1.3 2007/08/09 22:22:17 steven Exp $
---- src/main/gram.y.orig Mon Mar 26 18:42:08 2007
-+++ src/main/gram.y Thu Aug 9 00:44:00 2007
-@@ -174,7 +174,7 @@ static size_t ucstomb(char *s, wchar_t wc, mbstate_t *
+--- src/main/gram.y.orig Wed Sep 5 00:13:27 2007
++++ src/main/gram.y Sun Oct 7 09:58:19 2007
+@@ -173,7 +173,7 @@ static size_t ucstomb(char *s, const wchar_t wc, mbsta
static int mbcs_get_next(int c, wchar_t *wc)
{
Index: math/R/pkg/PLIST
===================================================================
RCS file: /cvs/ports/math/R/pkg/PLIST,v
retrieving revision 1.12
diff -u -r1.12 PLIST
--- math/R/pkg/PLIST 26 Apr 2007 20:26:12 -0000 1.12
+++ math/R/pkg/PLIST 7 Oct 2007 09:32:37 -0000
@@ -33,7 +33,6 @@
lib/R/bin/libtool
lib/R/bin/mkinstalldirs
lib/R/bin/pager
-lib/R/bin/texi2dvi
lib/R/doc/
lib/R/doc/AUTHORS
lib/R/doc/COPYING
@@ -137,6 +136,7 @@
lib/R/library/KernSmooth/CONTENTS
lib/R/library/KernSmooth/DESCRIPTION
lib/R/library/KernSmooth/INDEX
+lib/R/library/KernSmooth/LICENCE
lib/R/library/KernSmooth/Meta/
lib/R/library/KernSmooth/Meta/Rd.rds
lib/R/library/KernSmooth/Meta/hsearch.rds
@@ -837,6 +837,7 @@
lib/R/library/base/R-ex/Sys.setenv.R
lib/R/library/base/R-ex/Sys.sleep.R
lib/R/library/base/R-ex/Sys.time.R
+lib/R/library/base/R-ex/Sys.which.R
lib/R/library/base/R-ex/Version.R
lib/R/library/base/R-ex/abbreviate.R
lib/R/library/base/R-ex/agrep.R
@@ -934,6 +935,7 @@
lib/R/library/base/R-ex/formatDL.R
lib/R/library/base/R-ex/formatc.R
lib/R/library/base/R-ex/function.R
+lib/R/library/base/R-ex/funprog.R
lib/R/library/base/R-ex/gc.R
lib/R/library/base/R-ex/gc.time.R
lib/R/library/base/R-ex/get.R
@@ -1009,12 +1011,12 @@
lib/R/library/base/R-ex/ns-dblcolon.R
lib/R/library/base/R-ex/ns-topenv.R
lib/R/library/base/R-ex/numeric.R
+lib/R/library/base/R-ex/numeric_version.R
lib/R/library/base/R-ex/octmode.R
lib/R/library/base/R-ex/on.exit.R
lib/R/library/base/R-ex/options.R
lib/R/library/base/R-ex/order.R
lib/R/library/base/R-ex/outer.R
-lib/R/library/base/R-ex/package_version.R
lib/R/library/base/R-ex/parse.R
lib/R/library/base/R-ex/paste.R
lib/R/library/base/R-ex/path.expand.R
@@ -1171,6 +1173,7 @@
lib/R/library/base/help/Random-user
lib/R/library/base/help/RdUtils
lib/R/library/base/help/Recall
+lib/R/library/base/help/Reserved
lib/R/library/base/help/Rhome
lib/R/library/base/help/Round
lib/R/library/base/help/Signals
@@ -1185,6 +1188,7 @@
lib/R/library/base/help/Sys.setenv
lib/R/library/base/help/Sys.sleep
lib/R/library/base/help/Sys.time
+lib/R/library/base/help/Sys.which
lib/R/library/base/help/Trig
lib/R/library/base/help/UseMethod
lib/R/library/base/help/Version
@@ -1300,6 +1304,7 @@
lib/R/library/base/help/formatDL
lib/R/library/base/help/formatc
lib/R/library/base/help/function
+lib/R/library/base/help/funprog
lib/R/library/base/help/gc
lib/R/library/base/help/gc.time
lib/R/library/base/help/gctorture
@@ -1387,12 +1392,12 @@
lib/R/library/base/help/ns-reflect
lib/R/library/base/help/ns-topenv
lib/R/library/base/help/numeric
+lib/R/library/base/help/numeric_version
lib/R/library/base/help/octmode
lib/R/library/base/help/on.exit
lib/R/library/base/help/options
lib/R/library/base/help/order
lib/R/library/base/help/outer
-lib/R/library/base/help/package_version
lib/R/library/base/help/parse
lib/R/library/base/help/paste
lib/R/library/base/help/path.expand
@@ -1556,6 +1561,7 @@
lib/R/library/base/html/Random.html
lib/R/library/base/html/RdUtils.html
lib/R/library/base/html/Recall.html
+lib/R/library/base/html/Reserved.html
lib/R/library/base/html/Rhome.html
lib/R/library/base/html/Round.html
lib/R/library/base/html/Signals.html
@@ -1570,6 +1576,7 @@
lib/R/library/base/html/Sys.setenv.html
lib/R/library/base/html/Sys.sleep.html
lib/R/library/base/html/Sys.time.html
+lib/R/library/base/html/Sys.which.html
lib/R/library/base/html/Trig.html
lib/R/library/base/html/UseMethod.html
lib/R/library/base/html/Version.html
@@ -1685,6 +1692,7 @@
lib/R/library/base/html/formatDL.html
lib/R/library/base/html/formatc.html
lib/R/library/base/html/function.html
+lib/R/library/base/html/funprog.html
lib/R/library/base/html/gc.html
lib/R/library/base/html/gc.time.html
lib/R/library/base/html/gctorture.html
@@ -1772,12 +1780,12 @@
lib/R/library/base/html/ns-reflect.html
lib/R/library/base/html/ns-topenv.html
lib/R/library/base/html/numeric.html
+lib/R/library/base/html/numeric_version.html
lib/R/library/base/html/octmode.html
lib/R/library/base/html/on.exit.html
lib/R/library/base/html/options.html
lib/R/library/base/html/order.html
lib/R/library/base/html/outer.html
-lib/R/library/base/html/package_version.html
lib/R/library/base/html/parse.html
lib/R/library/base/html/paste.html
lib/R/library/base/html/path.expand.html
@@ -1940,6 +1948,7 @@
lib/R/library/base/latex/Random.tex
lib/R/library/base/latex/RdUtils.tex
lib/R/library/base/latex/Recall.tex
+lib/R/library/base/latex/Reserved.tex
lib/R/library/base/latex/Rhome.tex
lib/R/library/base/latex/Round.tex
lib/R/library/base/latex/Signals.tex
@@ -1954,6 +1963,7 @@
lib/R/library/base/latex/Sys.setenv.tex
lib/R/library/base/latex/Sys.sleep.tex
lib/R/library/base/latex/Sys.time.tex
+lib/R/library/base/latex/Sys.which.tex
lib/R/library/base/latex/Trig.tex
lib/R/library/base/latex/UseMethod.tex
lib/R/library/base/latex/Version.tex
@@ -2069,6 +2079,7 @@
lib/R/library/base/latex/formatDL.tex
lib/R/library/base/latex/formatc.tex
lib/R/library/base/latex/function.tex
+lib/R/library/base/latex/funprog.tex
lib/R/library/base/latex/gc.tex
lib/R/library/base/latex/gc.time.tex
lib/R/library/base/latex/gctorture.tex
@@ -2156,12 +2167,12 @@
lib/R/library/base/latex/ns-reflect.tex
lib/R/library/base/latex/ns-topenv.tex
lib/R/library/base/latex/numeric.tex
+lib/R/library/base/latex/numeric_version.tex
lib/R/library/base/latex/octmode.tex
lib/R/library/base/latex/on.exit.tex
lib/R/library/base/latex/options.tex
lib/R/library/base/latex/order.tex
lib/R/library/base/latex/outer.tex
-lib/R/library/base/latex/package_version.tex
lib/R/library/base/latex/parse.tex
lib/R/library/base/latex/paste.tex
lib/R/library/base/latex/path.expand.tex
@@ -3495,6 +3506,7 @@
lib/R/library/grDevices/R-ex/trans3d.R
lib/R/library/grDevices/R-ex/x11Fonts.R
lib/R/library/grDevices/R-ex/xy.coords.R
+lib/R/library/grDevices/R-ex/xyTable.R
lib/R/library/grDevices/R-ex/xyz.coords.R
lib/R/library/grDevices/R/grDevices
lib/R/library/grDevices/R/grDevices.rdb
@@ -3660,6 +3672,7 @@
lib/R/library/grDevices/help/x11Fonts
lib/R/library/grDevices/help/xfig
lib/R/library/grDevices/help/xy.coords
+lib/R/library/grDevices/help/xyTable
lib/R/library/grDevices/help/xyz.coords
lib/R/library/grDevices/html/
lib/R/library/grDevices/html/00Index.html
@@ -3713,6 +3726,7 @@
lib/R/library/grDevices/html/x11Fonts.html
lib/R/library/grDevices/html/xfig.html
lib/R/library/grDevices/html/xy.coords.html
+lib/R/library/grDevices/html/xyTable.html
lib/R/library/grDevices/html/xyz.coords.html
lib/R/library/grDevices/latex/
lib/R/library/grDevices/latex/Devices.tex
@@ -3765,6 +3779,7 @@
lib/R/library/grDevices/latex/x11Fonts.tex
lib/R/library/grDevices/latex/xfig.tex
lib/R/library/grDevices/latex/xy.coords.tex
+lib/R/library/grDevices/latex/xyTable.tex
lib/R/library/grDevices/latex/xyz.coords.tex
lib/R/library/grDevices/libs/
lib/R/library/grDevices/libs/grDevices.so
@@ -3836,6 +3851,7 @@
lib/R/library/graphics/R-ex/grid.R
lib/R/library/graphics/R-ex/hist.POSIXt.R
lib/R/library/graphics/R-ex/hist.R
+lib/R/library/graphics/R-ex/identify.R
lib/R/library/graphics/R-ex/image.R
lib/R/library/graphics/R-ex/layout.R
lib/R/library/graphics/R-ex/legend.R
@@ -3874,6 +3890,7 @@
lib/R/library/graphics/R-ex/text.R
lib/R/library/graphics/R-ex/title.R
lib/R/library/graphics/R-ex/units.R
+lib/R/library/graphics/R-ex/xspline.R
lib/R/library/graphics/R/graphics
lib/R/library/graphics/R/graphics.rdb
lib/R/library/graphics/R/graphics.rdx
@@ -3949,6 +3966,7 @@
lib/R/library/graphics/help/text
lib/R/library/graphics/help/title
lib/R/library/graphics/help/units
+lib/R/library/graphics/help/xspline
lib/R/library/graphics/help/zAxis
lib/R/library/graphics/html/
lib/R/library/graphics/html/00Index.html
@@ -4015,6 +4033,7 @@
lib/R/library/graphics/html/text.html
lib/R/library/graphics/html/title.html
lib/R/library/graphics/html/units.html
+lib/R/library/graphics/html/xspline.html
lib/R/library/graphics/html/zAxis.html
lib/R/library/graphics/latex/
lib/R/library/graphics/latex/abline.tex
@@ -4080,6 +4099,7 @@
lib/R/library/graphics/latex/text.tex
lib/R/library/graphics/latex/title.tex
lib/R/library/graphics/latex/units.tex
+lib/R/library/graphics/latex/xspline.tex
lib/R/library/graphics/latex/zAxis.tex
lib/R/library/graphics/man/
lib/R/library/graphics/man/graphics.Rd.gz
@@ -4139,6 +4159,7 @@
lib/R/library/grid/R-ex/grid.layout.R
lib/R/library/grid/R-ex/grid.lines.R
lib/R/library/grid/R-ex/grid.locator.R
+lib/R/library/grid/R-ex/grid.ls.R
lib/R/library/grid/R-ex/grid.move.to.R
lib/R/library/grid/R-ex/grid.plot.and.legend.R
lib/R/library/grid/R-ex/grid.polygon.R
@@ -4222,6 +4243,7 @@
lib/R/library/grid/help/grid.layout
lib/R/library/grid/help/grid.lines
lib/R/library/grid/help/grid.locator
+lib/R/library/grid/help/grid.ls
lib/R/library/grid/help/grid.move.to
lib/R/library/grid/help/grid.newpage
lib/R/library/grid/help/grid.pack
@@ -4296,6 +4318,7 @@
lib/R/library/grid/html/grid.layout.html
lib/R/library/grid/html/grid.lines.html
lib/R/library/grid/html/grid.locator.html
+lib/R/library/grid/html/grid.ls.html
lib/R/library/grid/html/grid.move.to.html
lib/R/library/grid/html/grid.newpage.html
lib/R/library/grid/html/grid.pack.html
@@ -4369,6 +4392,7 @@
lib/R/library/grid/latex/grid.layout.tex
lib/R/library/grid/latex/grid.lines.tex
lib/R/library/grid/latex/grid.locator.tex
+lib/R/library/grid/latex/grid.ls.tex
lib/R/library/grid/latex/grid.move.to.tex
lib/R/library/grid/latex/grid.newpage.tex
lib/R/library/grid/latex/grid.pack.tex
@@ -4461,6 +4485,7 @@
lib/R/library/lattice/R-ex/
lib/R/library/lattice/R-ex/Lattice.R
lib/R/library/lattice/R-ex/axis.default.R
+lib/R/library/lattice/R-ex/banking.R
lib/R/library/lattice/R-ex/barchart.table.R
lib/R/library/lattice/R-ex/barley.R
lib/R/library/lattice/R-ex/cloud.R
@@ -4469,11 +4494,14 @@
lib/R/library/lattice/R-ex/histogram.R
lib/R/library/lattice/R-ex/interaction.R
lib/R/library/lattice/R-ex/lattice.options.R
+lib/R/library/lattice/R-ex/level.colors.R
lib/R/library/lattice/R-ex/levelplot.R
lib/R/library/lattice/R-ex/make.groups.R
lib/R/library/lattice/R-ex/melanoma.R
+lib/R/library/lattice/R-ex/packet.panel.default.R
lib/R/library/lattice/R-ex/panel.bwplot.R
lib/R/library/lattice/R-ex/panel.violin.R
+lib/R/library/lattice/R-ex/panel.xyplot.R
lib/R/library/lattice/R-ex/print.trellis.R
lib/R/library/lattice/R-ex/qq.R
lib/R/library/lattice/R-ex/qqmath.R
@@ -4514,6 +4542,7 @@
lib/R/library/lattice/help/interaction
lib/R/library/lattice/help/lattice.options
lib/R/library/lattice/help/latticeParseFormula
+lib/R/library/lattice/help/level.colors
lib/R/library/lattice/help/levelplot
lib/R/library/lattice/help/llines
lib/R/library/lattice/help/lset
@@ -4574,6 +4603,7 @@
lib/R/library/lattice/html/interaction.html
lib/R/library/lattice/html/lattice.options.html
lib/R/library/lattice/html/latticeParseFormula.html
+lib/R/library/lattice/html/level.colors.html
lib/R/library/lattice/html/levelplot.html
lib/R/library/lattice/html/llines.html
lib/R/library/lattice/html/lset.html
@@ -4633,6 +4663,7 @@
lib/R/library/lattice/latex/interaction.tex
lib/R/library/lattice/latex/lattice.options.tex
lib/R/library/lattice/latex/latticeParseFormula.tex
+lib/R/library/lattice/latex/level.colors.tex
lib/R/library/lattice/latex/levelplot.tex
lib/R/library/lattice/latex/llines.tex
lib/R/library/lattice/latex/lset.tex
@@ -4696,6 +4727,7 @@
lib/R/library/methods/R-ex/NextMethod.R
lib/R/library/methods/R-ex/RMethodUtils.R
lib/R/library/methods/R-ex/S4groupGeneric.R
+lib/R/library/methods/R-ex/StructureClasses.R
lib/R/library/methods/R-ex/as.R
lib/R/library/methods/R-ex/canCoerce.R
lib/R/library/methods/R-ex/cbind2.R
@@ -4703,6 +4735,7 @@
lib/R/library/methods/R-ex/getMethod.R
lib/R/library/methods/R-ex/getPackageName.R
lib/R/library/methods/R-ex/hasArg.R
+lib/R/library/methods/R-ex/implicitGeneric.R
lib/R/library/methods/R-ex/is.R
lib/R/library/methods/R-ex/isSealedMethod.R
lib/R/library/methods/R-ex/method.skeleton.R
@@ -4757,6 +4790,7 @@
lib/R/library/methods/help/getMethod
lib/R/library/methods/help/getPackageName
lib/R/library/methods/help/hasArg
+lib/R/library/methods/help/implicitGeneric
lib/R/library/methods/help/initialize-methods
lib/R/library/methods/help/is
lib/R/library/methods/help/isSealedMethod
@@ -4818,6 +4852,7 @@
lib/R/library/methods/html/getMethod.html
lib/R/library/methods/html/getPackageName.html
lib/R/library/methods/html/hasArg.html
+lib/R/library/methods/html/implicitGeneric.html
lib/R/library/methods/html/initialize-methods.html
lib/R/library/methods/html/is.html
lib/R/library/methods/html/isSealedMethod.html
@@ -4878,6 +4913,7 @@
lib/R/library/methods/latex/getMethod.tex
lib/R/library/methods/latex/getPackageName.tex
lib/R/library/methods/latex/hasArg.tex
+lib/R/library/methods/latex/implicitGeneric.tex
lib/R/library/methods/latex/initialize-methods.tex
lib/R/library/methods/latex/is.tex
lib/R/library/methods/latex/isSealedMethod.tex
@@ -4966,6 +5002,7 @@
lib/R/library/mgcv/R-ex/magic.R
lib/R/library/mgcv/R-ex/mgcv-package.R
lib/R/library/mgcv/R-ex/mgcv.R
+lib/R/library/mgcv/R-ex/model.matrix.gam.R
lib/R/library/mgcv/R-ex/mono.con.R
lib/R/library/mgcv/R-ex/mroot.R
lib/R/library/mgcv/R-ex/new.name.R
@@ -5029,6 +5066,7 @@
lib/R/library/mgcv/help/mgcv
lib/R/library/mgcv/help/mgcv-package
lib/R/library/mgcv/help/mgcv.control
+lib/R/library/mgcv/help/model.matrix.gam
lib/R/library/mgcv/help/mono.con
lib/R/library/mgcv/help/mroot
lib/R/library/mgcv/help/new.name
@@ -5092,6 +5130,7 @@
lib/R/library/mgcv/html/mgcv-package.html
lib/R/library/mgcv/html/mgcv.control.html
lib/R/library/mgcv/html/mgcv.html
+lib/R/library/mgcv/html/model.matrix.gam.html
lib/R/library/mgcv/html/mono.con.html
lib/R/library/mgcv/html/mroot.html
lib/R/library/mgcv/html/new.name.html
@@ -5154,6 +5193,7 @@
lib/R/library/mgcv/latex/mgcv-package.tex
lib/R/library/mgcv/latex/mgcv.control.tex
lib/R/library/mgcv/latex/mgcv.tex
+lib/R/library/mgcv/latex/model.matrix.gam.tex
lib/R/library/mgcv/latex/mono.con.tex
lib/R/library/mgcv/latex/mroot.tex
lib/R/library/mgcv/latex/new.name.tex
@@ -8043,8 +8083,9 @@
lib/R/library/stats4/R-ex/BIC.R
lib/R/library/stats4/R-ex/mle.R
lib/R/library/stats4/R-ex/update-methods.R
-lib/R/library/stats4/R/all.rda
lib/R/library/stats4/R/stats4
+lib/R/library/stats4/R/stats4.rdb
+lib/R/library/stats4/R/stats4.rdx
lib/R/library/stats4/help/
lib/R/library/stats4/help/AIC-methods
lib/R/library/stats4/help/AnIndex
@@ -8719,6 +8760,7 @@
lib/R/library/utils/R-ex/read.socket.R
lib/R/library/utils/R-ex/readNEWS.R
lib/R/library/utils/R-ex/recover.R
+lib/R/library/utils/R-ex/relist.R
lib/R/library/utils/R-ex/roman.R
lib/R/library/utils/R-ex/savehistory.R
lib/R/library/utils/R-ex/select.list.R
@@ -8821,6 +8863,7 @@
lib/R/library/utils/help/read.table
lib/R/library/utils/help/readNEWS
lib/R/library/utils/help/recover
+lib/R/library/utils/help/relist
lib/R/library/utils/help/remove.packages
lib/R/library/utils/help/roman
lib/R/library/utils/help/savehistory
@@ -8926,6 +8969,7 @@
lib/R/library/utils/html/read.table.html
lib/R/library/utils/html/readNEWS.html
lib/R/library/utils/html/recover.html
+lib/R/library/utils/html/relist.html
lib/R/library/utils/html/remove.packages.html
lib/R/library/utils/html/roman.html
lib/R/library/utils/html/savehistory.html
@@ -9031,6 +9075,7 @@
lib/R/library/utils/latex/read.table.tex
lib/R/library/utils/latex/readNEWS.tex
lib/R/library/utils/latex/recover.tex
+lib/R/library/utils/latex/relist.tex
lib/R/library/utils/latex/remove.packages.tex
lib/R/library/utils/latex/roman.tex
lib/R/library/utils/latex/savehistory.tex
@@ -9089,11 +9134,13 @@
lib/R/share/java/
lib/R/share/java/getsp.class
lib/R/share/licenses/
-lib/R/share/licenses/Artistic
-lib/R/share/licenses/BSD
+lib/R/share/licenses/Artistic-1.0
+lib/R/share/licenses/Artistic-2.0
lib/R/share/licenses/GPL-2
+lib/R/share/licenses/GPL-3
lib/R/share/licenses/LGPL-2
lib/R/share/licenses/LGPL-2.1
+lib/R/share/licenses/LGPL-3
lib/R/share/locale/
lib/R/share/locale/de/
lib/R/share/locale/de/LC_MESSAGES/
@@ -9141,6 +9188,9 @@
lib/R/share/make/tests.mk
lib/R/share/make/vars.mk
lib/R/share/perl/
+lib/R/share/perl/File/
+lib/R/share/perl/File/Copy/
+lib/R/share/perl/File/Copy/Recursive.pm
lib/R/share/perl/R/
lib/R/share/perl/R/Dcf.pm
lib/R/share/perl/R/Logfile.pm
@@ -9169,5 +9219,7 @@
lib/R/share/texmf/ts1aer.fd
lib/R/share/texmf/ts1aett.fd
lib/R/share/texmf/upquote.sty
[EMAIL PROTECTED] man/cat3f/
@man man/man1/R.1
@man man/man1/Rscript.1
[EMAIL PROTECTED] man/man3f/
