Hey @ports,
I need some advices for my math/R[1] update. It build fine and other
ports are working with the libs but the bin/R throws the following
output.
# start R and called demo(image)
##################################################################
# R
R version 2.15.0 (2012-03-30)
Copyright (C) 2012 The R Foundation for Statistical Computing
ISBN 3-900051-07-0
Platform: x86_64-unknown-openbsd5.1 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
[Previously saved workspace restored]
> demo(image)
demo(image)
---- ~~~~~
Type <Return> to start :
> require(datasets)
> require(grDevices); require(graphics)
> x <- 10*(1:nrow(volcano)); x.at <- seq(100, 800, by=100)
> y <- 10*(1:ncol(volcano)); y.at <- seq(100, 600, by=100)
> # Using Terrain Colors
>
> image(x, y, volcano, col=terrain.colors(100),axes=FALSE)
/usr/local/lib/R/bin/exec/R:/usr/local/lib/libglib-2.0.so.3200.0: undefined
symbol 'pthread_attr_destroy'
/usr/local/lib/R/bin/exec/R:/usr/local/lib/libglib-2.0.so.3200.0: undefined
symbol 'pthread_create'
/usr/local/lib/R/bin/exec/R:/usr/local/lib/libglib-2.0.so.3200.0: undefined
symbol 'pthread_rwlock_rdlock'
/usr/local/lib/R/bin/exec/R:/usr/local/lib/libglib-2.0.so.3200.0: undefined
symbol 'pthread_attr_init'
/usr/local/lib/R/bin/exec/R:/usr/local/lib/libglib-2.0.so.3200.0: undefined
symbol 'pthread_rwlock_init'
/usr/local/lib/R/bin/exec/R:/usr/local/lib/libglib-2.0.so.3200.0: undefined
symbol 'pthread_key_delete'
/usr/local/lib/R/bin/exec/R:/usr/local/lib/libglib-2.0.so.3200.0: undefined
symbol 'pthread_condattr_setclock'
/usr/local/lib/R/bin/exec/R:/usr/local/lib/libglib-2.0.so.3200.0: undefined
symbol 'pthread_mutexattr_destroy'
/usr/local/lib/R/bin/exec/R:/usr/local/lib/libglib-2.0.so.3200.0: undefined
symbol 'pthread_rwlock_destroy'
/usr/local/lib/R/bin/exec/R:/usr/local/lib/libglib-2.0.so.3200.0: undefined
symbol 'pthread_rwlock_unlock'
/usr/local/lib/R/bin/exec/R:/usr/local/lib/libglib-2.0.so.3200.0: undefined
symbol 'pthread_detach'
/usr/local/lib/R/bin/exec/R:/usr/local/lib/libglib-2.0.so.3200.0: undefined
symbol 'pthread_attr_setstacksize'
/usr/local/lib/R/bin/exec/R:/usr/local/lib/libglib-2.0.so.3200.0: undefined
symbol 'pthread_rwlock_wrlock'
/usr/local/lib/R/bin/exec/R:/usr/local/lib/libglib-2.0.so.3200.0: undefined
symbol 'pthread_sigmask'
/usr/local/lib/R/bin/exec/R:/usr/local/lib/libglib-2.0.so.3200.0: undefined
symbol 'pthread_mutexattr_settype'
/usr/local/lib/R/bin/exec/R:/usr/local/lib/libglib-2.0.so.3200.0: undefined
symbol 'pthread_rwlock_trywrlock'
/usr/local/lib/R/bin/exec/R:/usr/local/lib/libglib-2.0.so.3200.0: undefined
symbol 'pthread_rwlock_tryrdlock'
/usr/local/lib/R/bin/exec/R:/usr/local/lib/libglib-2.0.so.3200.0: undefined
symbol 'pthread_mutexattr_init'
/usr/local/lib/R/bin/exec/R:/usr/local/lib/libglib-2.0.so.3200.0: undefined
symbol 'pthread_mutex_trylock'
/usr/local/lib/R/bin/exec/R:/usr/local/lib/libglib-2.0.so.3200.0: undefined
symbol 'pthread_join'
/usr/local/lib/R/bin/exec/R:/usr/local/lib/libcairo.so.11.1: undefined symbol
'pthread_mutexattr_destroy'
/usr/local/lib/R/bin/exec/R:/usr/local/lib/libcairo.so.11.1: undefined symbol
'pthread_mutexattr_settype'
/usr/local/lib/R/bin/exec/R:/usr/local/lib/libcairo.so.11.1: undefined symbol
'pthread_mutexattr_init'
*** caught segfault ***
address 0x34ba6, cause 'memory not mapped'
Traceback:
1: function (display = "", width, height, pointsize, gamma, bg, canvas,
fonts, family, xpos, ypos, title, type, antialias) { if (display == "" &&
.Platform$GUI == "AQUA" && is.na(Sys.getenv("DISPLAY", NA)))
Sys.setenv(DISPLAY = ":0") new <- list() if (!missing(display))
new$display <- display if (!missing(width)) new$width <- width if
(!missing(height)) new$height <- height if (!missing(gamma))
new$gamma <- gamma if (!missing(pointsize)) new$pointsize <-
pointsize if (!missing(bg)) new$bg <- bg if (!missing(canvas))
new$canvas <- canvas if (!missing(xpos)) new$xpos <- xpos if
(!missing(ypos)) new$ypos <- ypos if (!missing(title))
new$title <- title if (!checkIntFormat(new$title)) stop("invalid
'title'") if (!missing(type)) { new$type <- match.arg(type, c("Xlib",
"cairo", "nbcairo", "dbcairo")) if (!capabilities("cairo")
&& type != "Xlib") warning("cairo-based types are not supported on
this build - using \"Xlib\"") } if (!missing(family)) new$family
<- family if (!missing(fonts)) new$fonts <- fonts if
(!missing(antialias) && type != "Xlib") new$antialias <-
match.arg(antialias, aa.cairo) d <- check.options(new, name.opt =
".X11.Options", envir = .X11env) if (d$type == "Xlib" && !missing(family)) {
fns <- X11Fonts() if (!family %in% names(fns))
stop("unknown family for X11(type = \"XLib\")") d$fonts[1] <-
fns[[family]] } type <- if (capabilities("cairo")) switch(d$type,
cairo = 1L, nbcairo = 2L, dbcairo = 3L, 0L) else 0L if
(display == "XImage") type <- 0L antialias <- match(d$antialias,
aa.cairo) .Internal(X11(d$display, d$width, d$height, d$pointsize,
d$gamma, d$colortype, d$maxcubesize, d$bg, d$canvas, d$fonts,
NA_integer_, d$xpos, d$ypos, d$title, type, antialias, d$family))}()
2: dev.hold()
3: plot.default(NA, NA, xlim = xlim, ylim = ylim, type = "n", xaxs = xaxs,
yaxs = yaxs, xlab = xlab, ylab = ylab, ...)
4: plot(NA, NA, xlim = xlim, ylim = ylim, type = "n", xaxs = xaxs, yaxs =
yaxs, xlab = xlab, ylab = ylab, ...)
5: image.default(x, y, volcano, col = terrain.colors(100), axes = FALSE)
6: image(x, y, volcano, col = terrain.colors(100), axes = FALSE)
7: eval.with.vis(expr, envir, enclos)
8: eval.with.vis(ei, envir)
9: source(available, echo = echo, max.deparse.length = Inf, keep.source = TRUE)
10: demo(image)
##################################################################
Yes I see error but I have no idea in which combination pthread_* makes
problems. Does my R in combination with pthread is the problem or
libglib/libcairo in combination with pthread or with my R?
Maybe some Guru can help ;)
Cheers, Rafael
[1]: https://github.com/jasperla/openbsd-wip/tree/master/math/R
