On 2019/10/04 13:33, Christian Weisgerber wrote:
> math/py-pandas,python3 failed to build in my latest amd64 bulk build.
> Here's the tail end of the build (the full log is attached):
It needs cython as build dep. With the shiny new "JUNKING" logging we can
see it:
>>> Running configure in math/py-pandas,python3 at 1570139533
===> math/py-pandas,python3
===> Generating configure for py3-pandas-0.24.2
===> Configuring for py3-pandas-0.24.2
>>> Running build in math/py-pandas,python3 at 1570139534
===> math/py-pandas,python3
===> Building for py3-pandas-0.24.2
>> JUNKING in x11/kde/i18n3/te:
>> /usr/sbin/pkg_delete -aIXq arm-none-eabi-binutils-2.27p0 autoconf-2.13p4
>> bison-3.3.2p1 bzip2-1.0.8 curl-7.66.0 geos-3.7.1 gettext-tools-0.20.1p2
>> giflib-5.1.6 gmake-4.2.1p4 jasper-2.0.14 jpeg-2.0.3v0 json-c-0.13.1
>> kdelibs-3.5.10p51 libgeotiff-1.5.1 libmpc-0.9p2 libspatialite-4.3.0ap2
>> libwebp-1.0.3 metaauto-1.0p3 mpfr-3.1.5.2p1 openjp2-2.3.1 pcre-8.41p2
>> png-1.6.37 postgresql-client-11.5 proj-6.2.0 py-numpy-1.14.6p1
>> py-setuptools-41.0.0p0v0 py3-numpy-1.14.6p1 py3-setuptools-41.0.0p0v0
>> python-2.7.16p1 python-3.7.4 qhull-2012.1 qt3-mt-3.8p19 sqlite3-3.29.0
>> swig-3.0.12p0 tiff-4.0.10 xz-5.2.4 zstd-1.4.3
warning: __pyxutil:34:4: '___pyx_int64_t' redeclared
warning: __pyxutil:35:4: '___pyx_uint64_t' redeclared
warning: __pyxutil:34:4: '___pyx_int64_t' redeclared
warning: __pyxutil:35:4: '___pyx_uint64_t' redeclared
warning: __pyxutil:34:4: '___pyx_int64_t' redeclared
warning: __pyxutil:35:4: '___pyx_uint64_t' redeclared
Error compiling Cython file:
------------------------------------------------------------
...
import warnings
import cython
from cython import Py_ssize_t
from cpython cimport (Py_INCREF, PyTuple_SET_ITEM,
^
------------------------------------------------------------
pandas/_libs/lib.pyx:12:0: 'cpython.pxd' not found
[...]
Index: Makefile
===================================================================
RCS file: /cvs/ports/math/py-pandas/Makefile,v
retrieving revision 1.9
diff -u -p -r1.9 Makefile
--- Makefile 16 Jul 2019 20:38:03 -0000 1.9
+++ Makefile 4 Oct 2019 20:45:29 -0000
@@ -3,6 +3,7 @@
COMMENT = data analysis and manipulation library
MODPY_EGG_VERSION = 0.24.2
+REVISION = 0
DISTNAME = pandas-${MODPY_EGG_VERSION}
PKGNAME = py-${DISTNAME}
@@ -26,7 +27,8 @@ WANTLIB += ${COMPILER_LIBCXX} m ${MODPY
COMPILER = base-clang ports-gcc base-gcc
-BUILD_DEPENDS += math/py-numpy${MODPY_FLAVOR}>=1.9.0
+BUILD_DEPENDS += lang/cython${MODPY_FLAVOR} \
+ math/py-numpy${MODPY_FLAVOR}>=1.9.0
RUN_DEPENDS += devel/py-dateutil${MODPY_FLAVOR}>=2.5.0 \
devel/py-tz${MODPY_FLAVOR} \
----- Forwarded message from Stuart Henderson <[email protected]> -----
From: Stuart Henderson <[email protected]>
Date: Fri, 12 Apr 2019 15:59:45 +0100
To: Christian Weisgerber <[email protected]>
Cc: [email protected], "Elias M. Mariani" <[email protected]>
User-Agent: Mutt/1.11.4 (2019-03-13)
Subject: Re: Build failure: math/py-pandas,python3
Mail-Followup-To: Christian Weisgerber <[email protected]>, [email protected],
"Elias M. Mariani" <[email protected]>
On 2019/04/12 16:14, Christian Weisgerber wrote:
> math/py-pandas,python3 failed to build in my latest amd64 bulk build.
> Any idea what happened there?
Hidden optional dep. py3-Cython was present when configure started
running. but then got junked.
> ------------------------------------------------------------------------
> >>> Building on amd64-3 under math/py-pandas,python3
> BDEPENDS =
> [lang/python/3.6;math/py-numpy,python3;devel/py-setuptools,python3]
> DIST = [math/py-pandas:pandas-0.23.4.tar.gz]
> FULLPKGNAME = py3-pandas-0.23.4p0
> RDEPENDS =
> [lang/python/3.6;devel/py-tz,python3;devel/py-setuptools,python3;math/py-numpy,python3;devel/py-dateutil,python3]
> (Junk lock obtained for amd64-3 at 1555016012)
> >>> Running depends in math/py-pandas,python3 at 1555016012
> last junk was in x11/xzoom
> /usr/sbin/pkg_add -aI -Drepair py3-numpy-1.14.6 py3-setuptools-40.0.0v0
> python-3.6.8p0
> was: /usr/sbin/pkg_add -aI -Drepair py3-numpy-1.14.6 py3-setuptools-40.0.0v0
> python-3.6.8p0
> /usr/sbin/pkg_add -aI -Drepair py3-numpy-1.14.6 py3-setuptools-40.0.0v0
> python-3.6.8p0
> >>> Running show-prepare-results in math/py-pandas,python3 at 1555016016
> ===> math/py-pandas,python3
> ===> py3-pandas-0.23.4p0 depends on: py3-numpy->=1.9.0 -> py3-numpy-1.14.6
> ===> py3-pandas-0.23.4p0 depends on: python->=3.6,<3.7 -> python-3.6.8p0
> ===> py3-pandas-0.23.4p0 depends on: py3-setuptools->=39.0.1v0 ->
> py3-setuptools-40.0.0v0
> ===> Verifying specs: c++ c++abi pthread m python3.6m
> ===> found c++.2.1 c++abi.0.1 pthread.26.1 m.10.1 python3.6m.0.0
> py3-numpy-1.14.6
> py3-setuptools-40.0.0v0
> python-3.6.8p0
> (Junk lock released for amd64-3 at 1555016016)
> Woken up geo/py-shapely,python3
> distfiles size=10490077
> >>> Running patch in math/py-pandas,python3 at 1555016016
> ===> math/py-pandas,python3
> ===> Checking files for py3-pandas-0.23.4p0
> `/usr/ports/distfiles/pandas-0.23.4.tar.gz' is up to date.
> >> (SHA256) pandas-0.23.4.tar.gz: OK
> ===> Extracting for py3-pandas-0.23.4p0
> ===> Patching for py3-pandas-0.23.4p0
> ===> Applying OpenBSD patch patch-pandas_io_formats_terminal_py
> Hmm... Looks like a unified diff to me...
> The text leading up to this was:
> --------------------------
> |$OpenBSD: patch-pandas_io_formats_terminal_py,v 1.1.1.1 2018/09/14 08:09:05
> sthen Exp $
> |
> |Index: pandas/io/formats/terminal.py
> |--- pandas/io/formats/terminal.py.orig
> |+++ pandas/io/formats/terminal.py
> --------------------------
> Patching file pandas/io/formats/terminal.py using Plan A...
> Hunk #1 succeeded at 42.
> done
> ===> Applying OpenBSD patch patch-setup_cfg
> Hmm... Looks like a unified diff to me...
> The text leading up to this was:
> --------------------------
> |$OpenBSD: patch-setup_cfg,v 1.1.1.1 2018/09/14 08:09:05 sthen Exp $
> |
> |Index: setup.cfg
> |--- setup.cfg.orig
> |+++ setup.cfg
> --------------------------
> Patching file setup.cfg using Plan A...
> Hunk #1 succeeded at 27.
> done
> ===> Compiler link: clang -> /usr/bin/clang
> ===> Compiler link: clang++ -> /usr/bin/clang++
> ===> Compiler link: cc -> /usr/bin/cc
> ===> Compiler link: c++ -> /usr/bin/c++
> >>> Running configure in math/py-pandas,python3 at 1555016019
> ===> math/py-pandas,python3
> ===> Generating configure for py3-pandas-0.23.4p0
> ===> Configuring for py3-pandas-0.23.4p0
> >>> Running build in math/py-pandas,python3 at 1555016019
> ===> math/py-pandas,python3
> ===> Building for py3-pandas-0.23.4p0
> running egg_info
> writing pandas.egg-info/PKG-INFO
> writing dependency_links to pandas.egg-info/dependency_links.txt
> writing requirements to pandas.egg-info/requires.txt
> writing top-level names to pandas.egg-info/top_level.txt
> reading manifest file 'pandas.egg-info/SOURCES.txt'
> reading manifest template 'MANIFEST.in'
> no previously-included directories found matching 'doc/build'
> warning: no previously-included files matching '*.bz2' found anywhere in
> distribution
> warning: no previously-included files matching '*.csv' found anywhere in
> distribution
> warning: no previously-included files matching '*.dta' found anywhere in
> distribution
> warning: no previously-included files matching '*.gz' found anywhere in
> distribution
> warning: no previously-included files matching '*.h5' found anywhere in
> distribution
> warning: no previously-included files matching '*.html' found anywhere in
> distribution
> warning: no previously-included files matching '*.json' found anywhere in
> distribution
> warning: no previously-included files matching '*.msgpack' found anywhere in
> distribution
> warning: no previously-included files matching '*.pickle' found anywhere in
> distribution
> warning: no previously-included files matching '*.png' found anywhere in
> distribution
> warning: no previously-included files matching '*.pyc' found anywhere in
> distribution
> warning: no previously-included files matching '*.pyd' found anywhere in
> distribution
> warning: no previously-included files matching '*.sas7bdat' found anywhere in
> distribution
> warning: no previously-included files matching '*.so' found anywhere in
> distribution
> warning: no previously-included files matching '*.xls' found anywhere in
> distribution
> warning: no previously-included files matching '*.xlsm' found anywhere in
> distribution
> warning: no previously-included files matching '*.xlsx' found anywhere in
> distribution
> warning: no previously-included files matching '*.xpt' found anywhere in
> distribution
> warning: no previously-included files matching '*.xz' found anywhere in
> distribution
> warning: no previously-included files matching '*.zip' found anywhere in
> distribution
> warning: no previously-included files matching '*~' found anywhere in
> distribution
> warning: no previously-included files matching '.DS_Store' found anywhere in
> distribution
> warning: no previously-included files matching '.git*' found anywhere in
> distribution
> warning: no previously-included files matching '#*' found anywhere in
> distribution
> writing manifest file 'pandas.egg-info/SOURCES.txt'
> Traceback (most recent call last):
> File "./setup.py", line 38, in <module>
> ver = Cython.__version__
> AttributeError: module 'Cython' has no attribute '__version__'
> *** Error 1 in math/py-pandas (/usr/ports/lang/python/python.port.mk:219
> 'do-build': @: ;cd /usr/obj/ports/py-pandas-0.23.4-python3/pandas-0...)
> *** Error 1 in math/py-pandas (/usr/ports/infrastructure/mk/bsd.port.mk:2796
> '/usr/obj/ports/py-pandas-0.23.4-python3/.build_done')
> *** Error 1 in math/py-pandas (/usr/ports/infrastructure/mk/bsd.port.mk:2466
> 'build')
> ===> Exiting math/py-pandas,python3 with an error
> *** Error 1 in /usr/ports (infrastructure/mk/bsd.port.subdir.mk:137 'build')
> Error: job failed with 256 on amd64-3 at 1555016021
>
> --
> Christian "naddy" Weisgerber [email protected]
>
----- End forwarded message -----
