Hello ports@
attached diff updates math/py-bottleneck to 1.3.1:
- take MAINTAINER
- BROKEN-powerpc: there have been some changes in upstream, please retest on
powerpc and sparc64, for now I've added COMPILER but we might be able to do
without!
- tests all pass on python3, with python2 one test out of 190 fails (amd64
tested)
OK?
-m
Index: Makefile
===================================================================
RCS file: /cvs/ports/math/py-bottleneck/Makefile,v
retrieving revision 1.8
diff -u -p -u -p -r1.8 Makefile
--- Makefile 12 Jul 2019 20:47:46 -0000 1.8
+++ Makefile 4 Feb 2020 07:54:17 -0000
@@ -1,19 +1,20 @@
# $OpenBSD: Makefile,v 1.8 2019/07/12 20:47:46 sthen Exp $
-BROKEN-powerpc = bottleneck/src/move.c:568: internal compiler error: in
extract_insn, at recog.c:2077
-
COMMENT = fast NumPy array functions written in C
-MODPY_EGG_VERSION = 1.2.1
+MODPY_EGG_VERSION = 1.3.1
DISTNAME = Bottleneck-${MODPY_EGG_VERSION}
PKGNAME = py-${DISTNAME:L}
CATEGORIES = math
-REVISION = 1
+
+MAINTAINER = Martin Reindl <[email protected]>
# BSD
PERMIT_PACKAGE = Yes
-WANTLIB += ${MODPY_WANTLIB} pthread
+COMPILER = base-clang ports-gcc
+
+WANTLIB += ${MODPY_WANTLIB} pthread
MODULES = lang/python
@@ -27,8 +28,11 @@ MODPY_SETUPTOOLS = Yes
FLAVORS = python3
FLAVOR ?=
-# one test fail:
-# numpy 1.9.2 - median() don't check if array contains any nan's
+MODPY_PYTEST = Yes
+TEST_DEPENDS = devel/py-pluggy${MODPY_FLAVOR} \
+ devel/py-test${MODPY_FLAVOR}
+
+# on python2, test_memory_leak fails
pre-test:
@${MODPY_CMD} build_ext --inplace
Index: distinfo
===================================================================
RCS file: /cvs/ports/math/py-bottleneck/distinfo,v
retrieving revision 1.2
diff -u -p -u -p -r1.2 distinfo
--- distinfo 16 May 2017 14:57:28 -0000 1.2
+++ distinfo 4 Feb 2020 07:54:17 -0000
@@ -1,2 +1,2 @@
-SHA256 (Bottleneck-1.2.1.tar.gz) = bvzeX4MK7WT+r8oDWbUdsOGExyr4umZ1tKmfJjki6zY=
-SIZE (Bottleneck-1.2.1.tar.gz) = 105225
+SHA256 (Bottleneck-1.3.1.tar.gz) = RRWGNwRiy2I9atYEpUXR6X+1HSq1JSsaxXNQqD5JSig=
+SIZE (Bottleneck-1.3.1.tar.gz) = 88192
Index: patches/patch-setup_py
===================================================================
RCS file: /cvs/ports/math/py-bottleneck/patches/patch-setup_py,v
retrieving revision 1.2
diff -u -p -u -p -r1.2 patch-setup_py
--- patches/patch-setup_py 16 May 2017 14:57:28 -0000 1.2
+++ patches/patch-setup_py 4 Feb 2020 07:54:17 -0000
@@ -2,25 +2,39 @@ $OpenBSD: patch-setup_py,v 1.2 2017/05/1
Index: setup.py
--- setup.py.orig
+++ setup.py
-@@ -32,17 +32,17 @@ def prepare_modules():
- make_c_files()
- ext = [Extension("bottleneck.reduce",
- sources=["bottleneck/src/reduce.c"],
-- extra_compile_args=['-O2'])]
-+ extra_compile_args=[])]
- ext += [Extension("bottleneck.move",
- sources=["bottleneck/src/move.c",
- "bottleneck/src/move_median/move_median.c"],
-- extra_compile_args=['-O2'])]
-+ extra_compile_args=[])]
- ext += [Extension("bottleneck.nonreduce",
- sources=["bottleneck/src/nonreduce.c"],
-- extra_compile_args=['-O2'])]
-+ extra_compile_args=[])]
- ext += [Extension("bottleneck.nonreduce_axis",
- sources=["bottleneck/src/nonreduce_axis.c"],
-- extra_compile_args=['-O2'])]
-+ extra_compile_args=[])]
+@@ -108,7 +108,7 @@ def prepare_modules():
+ "bottleneck.reduce",
+ sources=["bottleneck/src/reduce.c"],
+ depends=base_includes,
+- extra_compile_args=["-O2"],
++ extra_compile_args=[],
+ )
+ ]
+ ext += [
+@@ -119,7 +119,7 @@ def prepare_modules():
+ "bottleneck/src/move_median/move_median.c",
+ ],
+ depends=base_includes +
["bottleneck/src/move_median/move_median.h"],
+- extra_compile_args=["-O2"],
++ extra_compile_args=[],
+ )
+ ]
+ ext += [
+@@ -127,7 +127,7 @@ def prepare_modules():
+ "bottleneck.nonreduce",
+ sources=["bottleneck/src/nonreduce.c"],
+ depends=base_includes,
+- extra_compile_args=["-O2"],
++ extra_compile_args=[],
+ )
+ ]
+ ext += [
+@@ -135,7 +135,7 @@ def prepare_modules():
+ "bottleneck.nonreduce_axis",
+ sources=["bottleneck/src/nonreduce_axis.c"],
+ depends=base_includes,
+- extra_compile_args=["-O2"],
++ extra_compile_args=[],
+ )
+ ]
return ext
-
-
Index: pkg/PLIST
===================================================================
RCS file: /cvs/ports/math/py-bottleneck/pkg/PLIST,v
retrieving revision 1.1.1.1
diff -u -p -u -p -r1.1.1.1 PLIST
--- pkg/PLIST 20 Nov 2016 10:18:58 -0000 1.1.1.1
+++ pkg/PLIST 4 Feb 2020 07:54:17 -0000
@@ -3,14 +3,17 @@ lib/python${MODPY_VERSION}/site-packages
lib/python${MODPY_VERSION}/site-packages/Bottleneck-${MODPY_EGG_VERSION}-py${MODPY_VERSION}.egg-info/PKG-INFO
lib/python${MODPY_VERSION}/site-packages/Bottleneck-${MODPY_EGG_VERSION}-py${MODPY_VERSION}.egg-info/SOURCES.txt
lib/python${MODPY_VERSION}/site-packages/Bottleneck-${MODPY_EGG_VERSION}-py${MODPY_VERSION}.egg-info/dependency_links.txt
+lib/python${MODPY_VERSION}/site-packages/Bottleneck-${MODPY_EGG_VERSION}-py${MODPY_VERSION}.egg-info/not-zip-safe
lib/python${MODPY_VERSION}/site-packages/Bottleneck-${MODPY_EGG_VERSION}-py${MODPY_VERSION}.egg-info/requires.txt
lib/python${MODPY_VERSION}/site-packages/Bottleneck-${MODPY_EGG_VERSION}-py${MODPY_VERSION}.egg-info/top_level.txt
lib/python${MODPY_VERSION}/site-packages/bottleneck/
-lib/python${MODPY_VERSION}/site-packages/bottleneck/LICENSE
lib/python${MODPY_VERSION}/site-packages/bottleneck/__init__.py
${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/bottleneck/${MODPY_PYCACHE}/
lib/python${MODPY_VERSION}/site-packages/bottleneck/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc
-lib/python${MODPY_VERSION}/site-packages/bottleneck/${MODPY_PYCACHE}version.${MODPY_PYC_MAGIC_TAG}pyc
+lib/python${MODPY_VERSION}/site-packages/bottleneck/${MODPY_PYCACHE}_pytesttester.${MODPY_PYC_MAGIC_TAG}pyc
+lib/python${MODPY_VERSION}/site-packages/bottleneck/${MODPY_PYCACHE}_version.${MODPY_PYC_MAGIC_TAG}pyc
+lib/python${MODPY_VERSION}/site-packages/bottleneck/_pytesttester.py
+lib/python${MODPY_VERSION}/site-packages/bottleneck/_version.py
lib/python${MODPY_VERSION}/site-packages/bottleneck/benchmark/
lib/python${MODPY_VERSION}/site-packages/bottleneck/benchmark/__init__.py
${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/bottleneck/benchmark/${MODPY_PYCACHE}/
@@ -21,10 +24,10 @@ lib/python${MODPY_VERSION}/site-packages
lib/python${MODPY_VERSION}/site-packages/bottleneck/benchmark/autotimeit.py
lib/python${MODPY_VERSION}/site-packages/bottleneck/benchmark/bench.py
lib/python${MODPY_VERSION}/site-packages/bottleneck/benchmark/bench_detailed.py
-lib/python${MODPY_VERSION}/site-packages/bottleneck/move.so
-lib/python${MODPY_VERSION}/site-packages/bottleneck/nonreduce.so
-lib/python${MODPY_VERSION}/site-packages/bottleneck/nonreduce_axis.so
-lib/python${MODPY_VERSION}/site-packages/bottleneck/reduce.so
+@so lib/python${MODPY_VERSION}/site-packages/bottleneck/move.so
+@so lib/python${MODPY_VERSION}/site-packages/bottleneck/nonreduce.so
+@so lib/python${MODPY_VERSION}/site-packages/bottleneck/nonreduce_axis.so
+@so lib/python${MODPY_VERSION}/site-packages/bottleneck/reduce.so
lib/python${MODPY_VERSION}/site-packages/bottleneck/slow/
lib/python${MODPY_VERSION}/site-packages/bottleneck/slow/__init__.py
${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/bottleneck/slow/${MODPY_PYCACHE}/
@@ -41,26 +44,29 @@ lib/python${MODPY_VERSION}/site-packages
lib/python${MODPY_VERSION}/site-packages/bottleneck/src/__init__.py
${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/bottleneck/src/${MODPY_PYCACHE}/
lib/python${MODPY_VERSION}/site-packages/bottleneck/src/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc
-lib/python${MODPY_VERSION}/site-packages/bottleneck/src/${MODPY_PYCACHE}template.${MODPY_PYC_MAGIC_TAG}pyc
-lib/python${MODPY_VERSION}/site-packages/bottleneck/src/template.py
+lib/python${MODPY_VERSION}/site-packages/bottleneck/src/${MODPY_PYCACHE}bn_config.${MODPY_PYC_MAGIC_TAG}pyc
+lib/python${MODPY_VERSION}/site-packages/bottleneck/src/${MODPY_PYCACHE}bn_template.${MODPY_PYC_MAGIC_TAG}pyc
+lib/python${MODPY_VERSION}/site-packages/bottleneck/src/bn_config.py
+lib/python${MODPY_VERSION}/site-packages/bottleneck/src/bn_template.py
lib/python${MODPY_VERSION}/site-packages/bottleneck/tests/
lib/python${MODPY_VERSION}/site-packages/bottleneck/tests/__init__.py
${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/bottleneck/tests/${MODPY_PYCACHE}/
lib/python${MODPY_VERSION}/site-packages/bottleneck/tests/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc
-lib/python${MODPY_VERSION}/site-packages/bottleneck/tests/${MODPY_PYCACHE}input_modifcation_test.${MODPY_PYC_MAGIC_TAG}pyc
+lib/python${MODPY_VERSION}/site-packages/bottleneck/tests/${MODPY_PYCACHE}input_modification_test.${MODPY_PYC_MAGIC_TAG}pyc
lib/python${MODPY_VERSION}/site-packages/bottleneck/tests/${MODPY_PYCACHE}list_input_test.${MODPY_PYC_MAGIC_TAG}pyc
+lib/python${MODPY_VERSION}/site-packages/bottleneck/tests/${MODPY_PYCACHE}memory_test.${MODPY_PYC_MAGIC_TAG}pyc
lib/python${MODPY_VERSION}/site-packages/bottleneck/tests/${MODPY_PYCACHE}move_test.${MODPY_PYC_MAGIC_TAG}pyc
lib/python${MODPY_VERSION}/site-packages/bottleneck/tests/${MODPY_PYCACHE}nonreduce_axis_test.${MODPY_PYC_MAGIC_TAG}pyc
lib/python${MODPY_VERSION}/site-packages/bottleneck/tests/${MODPY_PYCACHE}nonreduce_test.${MODPY_PYC_MAGIC_TAG}pyc
lib/python${MODPY_VERSION}/site-packages/bottleneck/tests/${MODPY_PYCACHE}reduce_test.${MODPY_PYC_MAGIC_TAG}pyc
lib/python${MODPY_VERSION}/site-packages/bottleneck/tests/${MODPY_PYCACHE}scalar_input_test.${MODPY_PYC_MAGIC_TAG}pyc
lib/python${MODPY_VERSION}/site-packages/bottleneck/tests/${MODPY_PYCACHE}util.${MODPY_PYC_MAGIC_TAG}pyc
-lib/python${MODPY_VERSION}/site-packages/bottleneck/tests/input_modifcation_test.py
+lib/python${MODPY_VERSION}/site-packages/bottleneck/tests/input_modification_test.py
lib/python${MODPY_VERSION}/site-packages/bottleneck/tests/list_input_test.py
+lib/python${MODPY_VERSION}/site-packages/bottleneck/tests/memory_test.py
lib/python${MODPY_VERSION}/site-packages/bottleneck/tests/move_test.py
lib/python${MODPY_VERSION}/site-packages/bottleneck/tests/nonreduce_axis_test.py
lib/python${MODPY_VERSION}/site-packages/bottleneck/tests/nonreduce_test.py
lib/python${MODPY_VERSION}/site-packages/bottleneck/tests/reduce_test.py
lib/python${MODPY_VERSION}/site-packages/bottleneck/tests/scalar_input_test.py
lib/python${MODPY_VERSION}/site-packages/bottleneck/tests/util.py
-lib/python${MODPY_VERSION}/site-packages/bottleneck/version.py
