Tomasz,
In the idle scenario you described, offline cpus
will consume more power than on-line CPUs which
are permitted to naturally enter idle.

That is becausee Linux today doesn't put offline
CPUS into deep power saving C-state:

http://bugzilla.kernel.org/show_bug.cgi?id=5471

cheers,
-Len

ps. you might consider suspending the system
and waking with the RTC if you just want to run
a backup in the middle of the night.

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