The problem with huge fonts on Linux has been raised on the forums a number of 
times. 
Oleg has put together a nice wiki page describing the problem

http://www.jsoftware.com/jwiki/Typesetting/Font%20Size/Java%206

http://www.jsoftware.com/pipermail/general/2008-October/032374.html

http://www.jsoftware.com/pipermail/general/2009-March/032876.html

http://www.jsoftware.com/pipermail/general/2009-April/032912.html


> From: Ronan Reilly
> 
> This is a message I sent last February regarding a large font problem I
> had on the Mac.  It may be relevant to your situaton.
> 
> 
> 
> On 29/05/2009 16:30, "Matthew Brand" wrote:
> 
> > Do you know which is the correct Java to use? How can I check which
> > one J is using?
> >
> > I have:
> > m...@mb-laptop:~/j64-602/bin$ java -version
> > java version "1.6.0_13"
> > Java(TM) SE Runtime Environment (build 1.6.0_13-b03)
> > Java HotSpot(TM) 64-Bit Server VM (build 11.3-b02, mixed mode)
> >
> >
> > On Fri, May 29, 2009 at 1:14 PM, Bill Harris
> > <[email protected]> wrote:
> >> Matthew Brand <[email protected]> writes:
> >>
> >>> I think that somebody solved this before, but I cannot find it in
> the
> >>> archives. This morning J was running perfectly well on Ubuntu 64
> for
> >>> me. Tonight the font used in the jwd window and used in the forms
> is
> >>> massive (at least twice it's former size) even though the font
> sizes
> >>> in all the options are set to 10 points.
> >>
> >> It vaguely sounds familiar, as if it happened to me when I used the
> >> wrong Java.

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