Johem,

Why the differences, and is there a correct way?

Both ways are correct. PROJ is supposed to follow the recommendations given at paragraph 7.3.3 Identifier of https://docs.ogc.org/is/18-010r11/18-010r11.pdf where there are lots of rules for when it is recommended to include or omit identifiers.

It seems to me that most of the information is redundant anyway, just the EPSG code could do: e.g. COMPOUNDCRS["Bonaire DPnet + Bonaire height",ID["EPSG",10764]]. What elements are mandatory and what not?

This is defined in the above mentionned WKT CRS standard.

This is relevant to me because we might want to change the CONVERSION of some PROJCRSs in EPSG in the future without changing the ID of the PROJCRS. Omitting the CONVERSION and only mentioning the ID of the PROJCRS in the WKT therefore seems a saver choice for the metadata of geo-information. Is this allowed?

No. The idea of WKT CRS is that you should be able to make sense of the definition without a geodetic database available. At least for the purpose of doing geographic <--> projected coordinate conversions (in the same datum)

Even

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