The evolving clash of Darwinists and doubters  
      By Kenneth Chang The New York Times

      TUESDAY, AUGUST 23, 2005
     




     
      NEW YORK At the heart of the debate over intelligent design is this 
question: Can a scientific explanation of the history of life include the 
actions of an unseen higher being? 

      The proponents of intelligent design, a school of thought that some have 
argued should be taught alongside evolution, say that the complexity and 
diversity of life go beyond what evolution can explain. 

      Biological marvels like the optical precision of an eye, the little 
spinning motors that propel bacteria, the cascade of proteins that cause blood 
to clot, they say, clearly point to the hand of a higher being at work in the 
world. 

      In one often-cited argument, Michael Behe, a professor of biochemistry at 
Lehigh University in Pennsylvania and a leading theorist of intelligent design, 
compared complex biological phenomena like blood clotting to a mousetrap: Take 
away any one piece - the spring, the baseboard, the metal piece that snags the 
mouse - and the mousetrap stops functioning. 

      Similarly, Behe argues, if any one of the more than 20 proteins involved 
in blood clotting is missing or deficient - as happens in hemophilia, for 
instance - clots will not form properly. 

      Such all-or-none systems, Behe and other proponents of intelligent design 
say, could not have arisen through the incremental changes that, according to 
evolution, allowed life to progress from primitive bacteria to the 
sophisticated abilities of humans. 

      These complex systems are "always associated with design," said Behe, who 
is the author of "Darwin's Black Box." 

      "We find such systems in biology, and since we know of no other way that 
these things can be produced, Darwinian claims notwithstanding, then we are 
rational to conclude they were indeed designed," he said. 

      It is an argument that appeals to many people of faith. 

      But mainstream scientists say that the claims of intelligent design run 
counter to a century of research supporting the explanatory and predictive 
power of Darwinian evolution, and that the design approach suffers from 
fundamental problems that place it outside the realm of science. 

      "One of the rules of science is, no miracles allowed," said Douglas 
Erwin, a paleobiologist at the Smithsonian Institution. "That's a fundamental 
presumption of what we do." 

      That does not mean that scientists do not believe in God. Many do. But 
they see science as an effort to find out how the material world works, with 
nothing to say about why we are here or how we should live. 

      And in that quest, they say, there is no need to resort to otherworldly 
explanations. So much evidence has been provided by evolutionary studies that 
biologists are able to explain even the most complex natural phenomena and to 
fill in whatever blanks remain with solid theories. 

      For example, while Behe and other leading design proponents see the blood 
clotting system as a product of design, mainstream scientists see it as a 
result of a coherent sequence of evolutionary events. 

      Early vertebrates like jawless fish are thought to have had a simple 
clotting system involving a few proteins that made blood stick together, said 
Russell Doolittle, a professor of molecular biology at the University of 
California at San Diego. 

      One hypothesis is that at some point, a mistake during the copying of DNA 
resulted in the duplication of a gene, increasing the amount of protein 
produced by that cell. 

      Most often, such a change would be useless. But in this case the extra 
protein helped blood clot, and animals with the extra protein were more likely 
to survive and reproduce. Over time, other proteins joined the system; several 
proteins involved in blood clotting appear to have started as digestive 
enzymes. 

      By studying the evolutionary tree and the genetics and biochemistry of 
organisms, Doolittle said, scientists have largely been able to determine the 
order in which different proteins became involved in helping blood clot, 
eventually producing the sophisticated clotting mechanisms of humans and other 
higher animals. The sequencing of animal genomes has provided evidence to 
support this view. 

      For example, scientists had predicted that more primitive animals like 
fish would be missing certain clotting proteins. In fact, the recent sequencing 
of the fish genome has shown just this. 

      "The evidence is rock solid," Doolittle said. 

      Unlike creationists, proponents of intelligent design accept many of the 
conclusions of modern science. They agree with cosmologists that the age of the 
universe is 13.6 billion years, not fewer than 10,000 years, as a literal 
reading of the Bible would suggest. They accept that mutation and natural 
selection - the central mechanisms of evolution - have acted in small ways, 
such as leading to the decay of eyes in certain salamanders that live 
underground. 

      Some advocates of intelligent design even accept the notion that all 
species come from a common ancestor, a central tenet of evolution. 

      Although the vast majority of scientists accept evolution, the Discovery 
Institute, a research center in Seattle that has emerged as a clearinghouse for 
the intelligent design movement, said that 404 scientists, including 70 
biologists, had signed a petition declaring that they were skeptical of 
Darwinism. 

      Nonetheless, many scientists regard intelligent design as little more 
than creationism. Despite its use of scientific language, they say, the 
approach offers only philosophical objections to evolution, not any positive 
evidence for the intervention of a designer. 


      But mainstream scientists, design proponents say, are unwilling to look 
beyond the material world when it comes to explaining things like the 
construction of an eye or the spinning motors that propel bacteria. Design 
proponents question why scientists, who are presumably seeking answers, would 
exclude one explanation. 

      "If we've defined science such that it cannot get to the true answer, 
we've got a pretty lame definition of science," said Douglas Axe, a molecular 
biologist and the director of research at the Biologic Institute, a research 
center in Seattle that looks at the organization of biological systems 
including intelligent design issues. He would not name the source of financing 
for the institute. 

      Stephen Meyer, director of the Center for Science and Culture at the 
Discovery Institute, compared the design approach to archaeologists 
investigating an ancient civilization. 

      "Imagine you're an archaeologist and you're looking at an inscription, 
and you say, 'Well, sorry, that looks like it's intelligent, but we can't 
invoke an intelligent cause because, as a matter of method, we have to limit 
ourselves to materialistic processes,"' Meyer said. "That would be nuts. 

      "The fact remains that the materialistic view is a truncated view of 
reality." 

      Mainstream scientists say the scientific method is indeed restricted to 
the material world, because it is trying to find out how it works. Saying, "it 
must have been designed," they say, is simply a way of not tackling the hardest 
problems. Meanwhile, there is no scientific evidence to suggest a designer's 
presence. 

      Darwin's theory, in contrast, has over the past century yielded so many 
solid findings that no mainstream biologist today doubts its basic tenets. 

      The theory has unlocked many of the mysteries of the natural world. By 
studying the skeletons of whales, evolutionary scientists traced the history of 
the whales' descent from small-hoofed land mammals. They made predictions about 
what the earliest water-dwelling whales might look like. In 1994, 
paleontologists reported discovering two such species, with many of the 
anatomical features that scientists had predicted. 


      Proponents of intelligent design say they are doing the mathematical work 
and biology experiments needed to put their ideas on firm scientific ground. 

      William Dembski, who headed a short-lived intelligent design institute at 
Baylor University, a Baptist institution in Texas, has worked on algorithms 
that purport to tell the difference between objects that were designed and 
those that occurred naturally. 

      Meanwhile, Axe has studied a protein, called penicillinase, that gives 
bacteria the ability to survive antibiotic penicillin. Meyer has referred to 
Axe's work in arguing that working proteins are so rare that evolution cannot 
by chance discover them. Axe looked at the probability that a protein with this 
ability could exist in a universe of all possible proteins. 

      Penicillinase is made up of a strand of chemicals called amino acids 
folded into a shape that binds to penicillin and thus disables it. Whether the 
protein folds up in the right way determines whether it works or not. 

      Axe calculated that of the plausible amino acid sequences, only one in 
100,000 trillion trillion trillion trillion trillion trillion - a number 
written as 1 followed by 77 zeroes - would provide resistance to penicillin. 

      Axe's research appeared last year in The Journal of Molecular Biology, a 
peer-reviewed scientific publication. 

      Kenneth Miller, a professor of biology at Brown University in Rhode 
Island and a frequent sparring partner of design proponents, said that Axe's 
study did not look at penicillinase "the way evolution looks at the protein." 

      Natural selection, he said, is not random. A small number of mutations 
can change the function of a protein, allowing it to diverge along new 
evolutionary paths and eventually form a new shape. 

      It is unreasonable, mainstream scientists say, for design advocates to 
demand that every tiny detail of evolution be filled in before they accept it. 

      Behe said he might find the mainstream scientists' argument compelling if 
they were to observe evolutionary leaps in the laboratory. He pointed to an 
experiment by Richard Lenski, a professor of microbial ecology at Michigan 
State University, who has been observing the evolution of E. coli bacteria for 
more than 15 years. "If anything cool came out of that," Behe said, "that would 
be one way to convince me." 

      Behe said that if he was correct, then the E. coli in Lenski's lab would 
evolve in small ways, but would never change in such a way that the bacteria 
would develop entirely new abilities. 

      In fact, that is what appears to have happened. Lenski said his 
experiment was not intended to explore this aspect of evolution, but "we have 
recently discovered a pretty dramatic exception, one where a new and surprising 
function has evolved," he said. 

      Lenski declined to give any details until the research is published. But, 
he said, "If anyone is resting his or her faith in God on the outcome that our 
experiment will not produce some major biological innovation, then I humbly 
suggest they should rethink the distinction between science and religion." 

      Behe said, "I'll wait and see." 




     


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