I am also having this issue. I am running identical instances of Prometheus 
on the same version though.
On Friday, November 6, 2020 at 8:02:31 AM UTC-8 [email protected] wrote:

> Hi. I have a HA Prometheus setup, with 2 instances(x.x.x.x and y.y.y.y) 
> scraping exactly the same targets. On the respective machines, Alertmanager 
> is also running and a mesh is created. But I am observing that all the 
> alerts are getting duplicated and I am receiving every alert twice. 
> Alertmanager Version - 0.21.0.
> /usr/local/bin/alertmanager --config.file 
> /etc/alertmanager/alertmanager.yml --storage.path /mnt/vol2/alertmanager 
> --data.retention=120h --log.level=debug --web.listen-address=x.x.x.x:9093 
> --cluster.listen-address=x.x.x.x:9094 --cluster.peer=y.y.y.y:9094
>
> Oh, one thing that just popped into my head, for the temporary testing 
> period I am running different versions of Prometheus in the instances. 
> 2.12.0 in one and 2.20.1 in the other one. Could this also cause this?
>
> Thanks in advance!
>

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