Remove the outer double quotes for the =~ version as well.
It works for me. For example, if I have a silence with
"matchers":[{"isEqual":true,"isRegex":true,"name":"instance","value":"r[1-8]"},
...
then I can see it using either:
curl -g 'http://localhost:9093/api/v2/silences?filter=instance=~r[1-8]'
or
curl -g 'http://localhost:9093/api/v2/silences?filter=instance=~"r[1-8]";'
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