Comment #1 on issue 288 by [email protected]: Generated java hashcode() function inconsistent across JVMs.
http://code.google.com/p/protobuf/issues/detail?id=288
Could also simply add a logical hashcode() implementation for com.google.protobuf.Descriptors.Descriptor and com.google.protobuf.UnknownFieldSet and that seems like it would put this one away (unless they have JVM-specific state somehow, doesn't seem like they do).
I could submit that patch tonight if that would satisfy people. Hard to supply corresponding test what with the cross-JVM-ness of the issue.
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