Updates:
        Status: WorkingAsIntended

Comment #1 on issue 347 by xiaof...@google.com: C++ namespace behaviour does not match Java behaviour - creates duplicate symbols
http://code.google.com/p/protobuf/issues/detail?id=347

This will result in a compile error when compiling with protocol compiler (e.g., "protoc --java_out=. foo.proto bar.proto" will fail). However, if foo.proto and bar.proto are compiled separately, there is no way the compiler can detect this conflict. The resulted Java source may have undefined behavior due to the name conflict (even if they have different Java package names). You'd better avoid this by assigning different names to protobuf messages.

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