Comment #2 on issue 449 by ltwar...@gmail.com: Link error while using clang++ with -stdlib=libc++ flag in OSX
http://code.google.com/p/protobuf/issues/detail?id=449

Ps. this solves the problem of building protobuf with libc++ and clang++ :) Your problem with the link errors comes from that You are trying to mix libs compiled with libstdc++ and libc++, this can't be as for example string implementations in those two differ so those libs are not binary compatible (except for some low lebel stuff), see this post:
http://stackoverflow.com/questions/8454329/why-cant-clang-with-libc-in-c0x-mode-link-this-boostprogram-options-examp

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