We're using a toolchain with a C++ <set> implementation that warns if the 
set uses a comparator without a const call operator:

In file included from ... 
/protobuf/src/google/protobuf/compiler/java/java_file.cc:41:
In file included from ... /stl/gcc3/set:12:
In file included from ... /include/c++/v1/set:389:
... include/c++/v1/__tree:1817:22: error: the specified comparator type 
does not provide a const call operator [-Werror,-Wuser-defined-warnings]
... include/c++/v1/set:400:28: note: in instantiation of member function 
'std::__2::__tree<const google::protobuf::FieldDescriptor *, 
google::protobuf::compiler::java::(anonymous 
namespace)::FieldDescriptorCompare, std::__2::allocator<const 
google::protobuf::FieldDescriptor *> >::~__tree' requested here
class _LIBCPP_TEMPLATE_VIS set

Likely toolchain change:
https://reviews.llvm.org/rL291969

This seems like a reasonable warning since a mutable comparator seems like 
the kind of thing that would defy expectations.

Any objections to patching src/google/protobuf/compiler/java/java_file.cc 
with a const operator ()?

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