This seems to be a known issue.  There's a fix noted here:
https://prototype.lighthouseapp.com/projects/8886/tickets/771-cloneposition-produces-js-error-in-ie-7-p-161_rc3

On Aug 11, 11:29 am, fda <[email protected]> wrote:
> Hi, we are using Prototype 1.6.0.3 in combination with Gabriel Lanzani
> select.js. When loading the page in (any) IE browser, the first time
> the select box is clicked it will not open and a js error will
> occure.
>
> As fare as i understand at some point after the click the Prototype
> getOffsteParent is called with the actual Document element as
> argument. Wich later then will create an exception in element.getStyle
> because the document node dose not have a style property. Im not sure
> if it is Prototype's job to check whether the argument will create an
> exception. I patched the getOffsetParent checking whether the argument
> is not document (element !== document).
>
> I know that altering the library files is not Best Practice, maybe the
> problem could be fixed in future within Prototype, that if it is his
> responsibility.
>
> greetings
> FDA

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