Note that the GO evidence codes are a subset of the evidence codes
available on OBO:
http://obo.sourceforge.net/cgi-bin/detail.cgi?evidence_code
On Aug 1, 2006, at 11:19 AM, Joanne Luciano wrote:
Hi,
Here's a short list of Evidence Code / Ontology Links/papers:
1. SRI/Peter Karp - the BioCyc family of pathway databases:
Paper: An Evidence Ontology for Use in Pathway/Genome Databases
Their site is apparently down now, but if you go to the site and
look at the details of pathways (if I remember correctly) they use
icons to indicate the evidence of a particular piece of data in a
pathway.
Here's the paper: http://psb.stanford.edu/psb-online/proceedings/
psb04/karp.pdf
2. The Gene Ontology:
http://www.geneontology.org/GO.evidence.shtml
IC: Inferred by Curator
IDA: Inferred from Direct Assay
IEA: Inferred from Electronic Annotation
IEP: Inferred from Expression Pattern
IGI: Inferred from Genetic Interaction
IMP: Inferred from Mutant Phenotype
IPI: Inferred from Physical Interaction
ISS: Inferred from Sequence or Structural Similarity
NAS: Non-traceable Author Statement
ND: No biological Data available
RCA: inferred from Reviewed Computational Analysis
TAS: Traceable Author Statement
NR: Not Recorded
3. Evidence Based Medicine (http://ebmg.wiley.com/sovellukset/ltk/
ebmgfrontpage.html)
Over 2 500 high-quality evidence summaries supporting the given
recommendations – a specific feature of the guidelines is the use
of evidence codes (graded from A where strong evidence exists and
further research is unlikely to change the conclusion, to D where
the evidence is weak and the estimate of effect is uncertain)·
Joanne
On Aug 1, 2006, at 12:07 PM, [EMAIL PROTECTED] wrote:
ACPP Tcon on Tuesday, August 1
SW_HCLS(ACPP)
SW Life Sciences IG
Tuesdays
1:00pm-2:15pm/17:00-18:15 UTC
Zakim Bridge +1.617.761.6200, conference 2277 ("ACPP")
Agenda:
- Review and Discussion: Representing Diabetes Guideline (Fibrate)
using ontology and rules.
Helen
