Hi Jin,
Thanks a lot for your reply.
Yes I presume this is where the issues comes from. I'm using gcc v.4.7.3.
Best regards,
Antonio
On Wednesday, October 5, 2016 at 11:31:35 AM UTC+2, Jin Seok Park wrote:
>
> Hi Antonio,
>
> Which version of gcc are you using?
> It seems that your C compiler does not support '#pragma omp simd' which
> is one of OpenMP 4.0 features. As mentioned in the user guide, PyFR 1.5
> with openmp backend needs GCC>= 4.9 which support OpenMP 4.0.
>
> You can also use other C compiler which supports OpenMP 4.0, such as
> intel C compiler. In this case, you need to specify C compiler as below.
>
> [backend-openmp]
> cc = icc (or your C compiler)
>
> Regards,
>
> Jin Seok
>
> On Wed, 2016-10-05 at 02:08 -0700, Antonio Garcia-Uceda wrote:
> > Dear all,
> >
> >
> > I've tried to run the last release of PyFR v.1.5.0. However I get the
> > error message below, I presume related to the compilation of files
> > created by PyFR with the solver kernels therein. Previous version
> > v.1.4.0 runs correctly.
> >
> >
> > Please let me know if you know the source of these issues.
> >
> >
> > Thanks in advance.
> >
> >
> > Best regards,
> > Antonio
> >
> >
> >
> >
> > File
> > "/develop/home/antonio/Software_Local/localLibs/Python3/build/bin/pyfr",
> line 9, in <module>
> > load_entry_point('pyfr==1.5.0', 'console_scripts', 'pyfr')()
> > File
> >
> "/develop/home/antonio/Software_Local/localLibs/Python3/build/lib/python3.3/site-packages/pyfr-1.5.0-py3.3.egg/pyfr/__main__.py",
>
> line 110, in main
> > File
> >
> "/develop/home/antonio/Software_Local/localLibs/Python3/build/lib/python3.3/site-packages/pyfr-1.5.0-py3.3.egg/pyfr/__main__.py",
>
> line 235, in process_run
> > File
> >
> "/develop/home/antonio/Software_Local/localLibs/Python3/build/lib/python3.3/site-packages/pyfr-1.5.0-py3.3.egg/pyfr/__main__.py",
>
> line 216, in _process_common
> > File
> >
> "/develop/home/antonio/Software_Local/localLibs/Python3/build/lib/python3.3/site-packages/pyfr-1.5.0-py3.3.egg/pyfr/solvers/__init__.py",
>
> line 14, in get_solver
> > File
> >
> "/develop/home/antonio/Software_Local/localLibs/Python3/build/lib/python3.3/site-packages/pyfr-1.5.0-py3.3.egg/pyfr/integrators/__init__.py",
>
> line 43, in get_integrator
> > File
> >
> "/develop/home/antonio/Software_Local/localLibs/Python3/build/lib/python3.3/site-packages/pyfr-1.5.0-py3.3.egg/pyfr/integrators/std/controllers.py",
>
> line 12, in __init__
> > File
> >
> "/develop/home/antonio/Software_Local/localLibs/Python3/build/lib/python3.3/site-packages/pyfr-1.5.0-py3.3.egg/pyfr/integrators/std/steppers.py",
>
> line 8, in __init__
> > File
> >
> "/develop/home/antonio/Software_Local/localLibs/Python3/build/lib/python3.3/site-packages/pyfr-1.5.0-py3.3.egg/pyfr/integrators/std/base.py",
>
> line 12, in __init__
> > File
> >
> "/develop/home/antonio/Software_Local/localLibs/Python3/build/lib/python3.3/site-packages/pyfr-1.5.0-py3.3.egg/pyfr/integrators/base.py",
>
> line 59, in __init__
> > File
> >
> "/develop/home/antonio/Software_Local/localLibs/Python3/build/lib/python3.3/site-packages/pyfr-1.5.0-py3.3.egg/pyfr/solvers/base/system.py",
>
> line 65, in __init__
> > File
> >
> "/develop/home/antonio/Software_Local/localLibs/Python3/build/lib/python3.3/site-packages/pyfr-1.5.0-py3.3.egg/pyfr/solvers/base/system.py",
>
> line 174, in _gen_kernels
> > File
> >
> "/develop/home/antonio/Software_Local/localLibs/Python3/build/lib/python3.3/site-packages/pyfr-1.5.0-py3.3.egg/pyfr/solvers/baseadvec/elements.py",
>
> line 57, in <lambda>
> > File
> >
> "/develop/home/antonio/Software_Local/localLibs/Python3/build/lib/python3.3/site-packages/pyfr-1.5.0-py3.3.egg/pyfr/backends/base/backend.py",
>
> line 166, in kernel
> > File
> >
> "/develop/home/antonio/Software_Local/localLibs/Python3/build/lib/python3.3/site-packages/pyfr-1.5.0-py3.3.egg/pyfr/backends/openmp/gimmik.py",
>
> line 34, in mul
> > File
> >
> "/develop/home/antonio/Software_Local/localLibs/Python3/build/lib/python3.3/site-packages/pyfr-1.5.0-py3.3.egg/pyfr/util.py",
>
> line 34, in __call__
> > File
> >
> "/develop/home/antonio/Software_Local/localLibs/Python3/build/lib/python3.3/site-packages/pyfr-1.5.0-py3.3.egg/pyfr/backends/openmp/provider.py",
>
> line 13, in _build_kernel
> > File
> >
> "/develop/home/antonio/Software_Local/localLibs/Python3/build/lib/python3.3/site-packages/pyfr-1.5.0-py3.3.egg/pyfr/backends/openmp/compiler.py",
>
> line 61, in __init__
> > File
> >
> "/develop/home/antonio/Software_Local/localLibs/Python3/build/lib/python3.3/site-packages/pyfr-1.5.0-py3.3.egg/pyfr/backends/openmp/compiler.py",
>
> line 30, in __init__
> > File
> >
> "/develop/home/antonio/Software_Local/localLibs/Python3/build/lib/python3.3/site-packages/pyfr-1.5.0-py3.3.egg/pyfr/backends/openmp/compiler.py",
>
> line 80, in _build
> > File
> >
> "/develop/home/antonio/Software_Local/localLibs/Python3/build/lib/python3.3/site-packages/pytools-2016.2.2-py3.3.egg/pytools/prefork.py",
>
> line 223, in call_capture_output
> > return forker.call_capture_output(cmdline, cwd, error_on_nonzero)
> > File
> >
> "/develop/home/antonio/Software_Local/localLibs/Python3/build/lib/python3.3/site-packages/pytools-2016.2.2-py3.3.egg/pytools/prefork.py",
>
> line 180, in call_capture_output
> > error_on_nonzero)
> > File
> >
> "/develop/home/antonio/Software_Local/localLibs/Python3/build/lib/python3.3/site-packages/pytools-2016.2.2-py3.3.egg/pytools/prefork.py",
>
> line 162, in _remote_invoke
> > raise result
> > pytools.prefork.ExecError: error invoking 'cc -shared -std=c99 -Ofast
> > -march=native -fopenmp -fPIC -o libtmp.so tmp.c': status 1 invoking
> > 'cc -shared -std=c99 -Ofast -march=native -fopenmp -fPIC -o libtmp.so
> > tmp.c': b'tmp.c: In function \xe2\x80\x98gimmik_mm\xe2\x80\x99:
> > \ntmp.c:9:30: error: expected \xe2\x80\x98#pragma omp\xe2\x80\x99
> > clause before \xe2\x80\x98simd\xe2\x80\x99\n'
> >
> >
> >
> >
>
> --
> Dr. Jin Seok Park PhD
> Postdoctoral Researcher
> Department of Aeronautics
> Imperial College London
> London, UK, SW7 2AZ
>
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