Hi all,
before I forget... I put some time into incorporating a summer student's
work on drawing images from pygr NLMSAs, and got basic features working
with names. Here's a simple example:
http://iorich.caltech.edu/~t/transfer/pygr-draw-image.png
This is the first 100kb of a bacterial genome, layered with genes
(black) and intergenic regions (red). It was surprisingly difficult to
get the names working properly :).
The interface is as simple as
p = pygr_draw.draw_annotation_maps(sequence, (nlmsa1, nlmsa2, ...))
and it automatically picks off various attributes like 'name' and
'color' from features if they're present.
Not production quality yet, but I thought I'd share...
cheers,
--titus
--
C. Titus Brown, [EMAIL PROTECTED]
--~--~---------~--~----~------------~-------~--~----~
You received this message because you are subscribed to the Google Groups
"pygr-dev" group.
To post to this group, send email to [email protected]
To unsubscribe from this group, send email to [EMAIL PROTECTED]
For more options, visit this group at
http://groups.google.com/group/pygr-dev?hl=en
-~----------~----~----~----~------~----~------~--~---
