Hi Paul, actually, could you send me a brief example of your steps that led to this error message? NLMSA already has code that checks for attempts to pickle an in-memory NLMSA, so you should have received a more meaningful error message "can't pickle NLMSA.in_memory_mode" instead of the obscure error message you got here. I would like to track down why that is happening...
Yours with thanks, Chris On Dec 21, 2008, at 1:04 PM, Paul Rigor wrote: > > Hi, > > What is the best strategy for pickling pygr blast results? I receive > the following error when pickling a python dictionary containing the > result objects. > > File "pygr.cnestedlist.pyx", line 1660, in > pygr.cnestedlist.NLMSA.__iadd__ > File "/home/dock/shared_libraries/lx64/pkgs/python/2.5.1/lib/ > python2.5/site-packages/pygr/nlmsa_utils.py", line 97, in saveSeq > File "pygr.cnestedlist.pyx", line 1423, in > pygr.cnestedlist.NLMSASequence.__iadd__ > AttributeError: 'int' object has no attribute 'pathForward' > > > Thanks, > Paul --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "pygr-dev" group. To post to this group, send email to [email protected] To unsubscribe from this group, send email to [email protected] For more options, visit this group at http://groups.google.com/group/pygr-dev?hl=en -~----------~----~----~----~------~----~------~--~---
