Once again, the megatest scripts are using old non-public interfaces
for trying to control pygrdatapath and cache clearing. We need to
replace those with the new public interfaces and everything should
work fine. I am about to test that.
-- Chris
On Mar 25, 2009, at 6:29 PM, Marek Szuba wrote:
>
> Hi again,
>
> Another thing, this time related to dm2_download_megatest: if you
> replace 'pygr.Data.getResource.addResourceDict' with
> 'pygr.Data.addResourceDict' in line 57 of
> pygr/apps/catalog_downloads.py, the test passes the point which caused
> the previous error but fails in a different way:
>
> [...]
> Download done.
> gunzipping /tmp/test21671/dm2_multiz9way.txt.gz...
> Saving NLMSA indexes from textdump /tmp/test21671/dm2_multiz9way.txt
> Saving NLMSA binary index: 0 NLMSA_LPO_Internal 0 165964729
> ...
> Saving NLMSA binary index: 1 NLMSA_UNION_Internal 1 1847310997
> ...
> Traceback (most recent call last):
> File "protest.py", line 123, in <module>
> if do_test(sys.argv[2],sys.argv[3],sys.argv[4]):
> File "protest.py", line 33, in do_test
> m()
> File "/result/aqq/pygr/tests/oldtests/dm2_download_megatest.py",
> line 50, in download_test
> pygrData.save() # save the built resources
> File "/result/aqq/pygr/build/lib.linux-x86_64-2.5/pygr/
> metabase.py", line 729, in commit
> self.get_writer().saver.save_pending()
> File "/result/aqq/pygr/build/lib.linux-x86_64-2.5/pygr/
> metabase.py", line 1039, in save_pending
> raise PygrDataEmptyError('there is no data queued for saving!')
> pygr.metabase.PygrDataEmptyError: there is no data queued for saving!
>
> --
> MS
>
>
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