Hi, as we discussed some time ago, I replaced almost all instances of the string pygr.Data / PYGRDATA / pygrData etc. with the new name, worldbase, throughout the pygr source code and test files. Next, I am going to eliminate it from the 0.8 docs. From this point forwards we are not telling anyone about "pygr.Data" but instead "worldbase".
The old pygr.Data still exists for backwards compatibility, but is officially deprecated. I guess I should add a deprecation warning... FYI, you use worldbase more or less like pygr.Data from pygr import worldbase hg18 = worldbase.Bio.Seq.Genome.HUMAN.hg18() worldbase.update(new_worldbase_path) # lets you change the path to anything you want worldbase.clear_cache() # forces any future requests to load a brand- new object... There are few minor changes to method names, e.g. worldbase.commit() instead of pygr.Data.save(). I PROMISE to finish the new 0.8 docs within the week!!! -- Chris --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "pygr-dev" group. To post to this group, send email to pygr-dev@googlegroups.com To unsubscribe from this group, send email to pygr-dev+unsubscr...@googlegroups.com For more options, visit this group at http://groups.google.com/group/pygr-dev?hl=en -~----------~----~----~----~------~----~------~--~---
