Chris,
> OK, as I thought, something is going wrong with the reading of your
> sequence file.
Yes, the problem came from my side: I had not deleted the tar.gz
file !
Sorry for this mistake.
Now the building process is running but I have been obliged to modify
slightly the command.
if I run the following command from the directory which contains maf
msa = cnestedlist.NLMSA('hs18mm8rn4','w',genomeUnion,os.listdir
('maf'))
I got an error saying that ch1.maf file could not been read.
So I did an os.chdir('maf') and then it runs with
msa = cnestedlist.NLMSA('hs18mm8rn4','w',genomeUnion,os.listdir('./))
but not with the proper separator for windows :
msa = cnestedlist.NLMSA('hs18mm8rn4','w',genomeUnion,os.listdir(''.
\'))
I will try it again tomorow to confirm it
Michel
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