Hi Titus, One quick question. When I tried to open ScreedSequenceDB, there is an initial delay, a few seconds. It seems screed is trying to load all hash tables into memory (I checked the memory and it *is* using large memory). Is there any way to avoid large memory usage?
Thanks, Namshin Kim On Sat, Apr 18, 2009 at 2:40 AM, C. Titus Brown <c...@msu.edu> wrote: > > On Fri, Apr 17, 2009 at 03:13:10PM +0900, Namshin Kim wrote: > -> I am using ScreedSequenceDB without pickling (supply prefixUnionDict in > -> cnestedlist.NLMSA and didn't do .save_seq_dict()). So, I can use > -> ScreedSequenceDB for my NLMSA. > > cool! > > -> One little inconvenience is that there is no .record attribute in > -> NLMSA.edges() output. Maybe screed is not fully implemented inside pygr > yet. > > I guess not ;). I will have to look into how to decorate sequence > slices with additional attributes. > > --titus > > > > --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "pygr-dev" group. To post to this group, send email to pygr-dev@googlegroups.com To unsubscribe from this group, send email to pygr-dev+unsubscr...@googlegroups.com For more options, visit this group at http://groups.google.com/group/pygr-dev?hl=en -~----------~----~----~----~------~----~------~--~---
