So, I've gotten the mapping to work, but only sometimes?
The code is here (http://kmdaily.pastebin.com/m6d4a86c3) that I'm
running.
I'm checking the length of the Mapping when I'm done loading all the
things to map (its ~9000), adding it to worldbase, and checking the
length again (still 9000). Then, the code exits, and I try to load it
on the command line or use it again, and it has a 0 length. I look at
the file that its writing to, and I can see the data in it (the keys
and values of the objects from the AnnotationDBs that I added). The
object loads fine, and it accesses the database backend fine as well
(watching the db connections shows it connecting). Any suggestions how
to track the problem? Thanks!
Kenny
On Jun 8, 3:49 pm, Kenny Daily <kmda...@gmail.com> wrote:
> Thanks, works great. I can't wait to apply this in so many other areas
> where I've been manually loading in 3-4 different datasets that are
> related to each other.
>
> On Jun 8, 3:11 pm, Christopher Lee <l...@chem.ucla.edu> wrote:
>
> > On Jun 8, 2009, at 2:59 PM, Kenny Daily wrote:
>
> > > I'm running this line that should give
> > > me this:
>
> > > schema = metabase.OneToManyRelation(annotdb1, annotdb2, bindAttrs=
> > > ('ltrs', 'genes'))
>
> > > Where annotdb1 are the genes, and annotdb2 are the repeats.
>
> > > Any suggestions on how to troubleshoot this problem? An full example
> > > is available athttp://kmdaily.pastebin.com/m5f21ff52. Thanks!
>
> > Hi Kenny,
> > use the worldbase.add_schema() method, not add_resource(). I.e.
> > instead of
>
> > worldbase.add_resource("schema.%s" % resource_string, schema)
>
> > use
>
> > worldbase.add_schema(resource_string, schema)
>
> > -- Chris
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