On Wed, Jun 03, 2009 at 12:03:04PM -0700, Christopher Lee wrote: -> On Jun 3, 2009, at 11:08 AM, C. Titus Brown wrote: -> -> > OK -- I may have to go re-check the code, but is it true that if -> > formatdb fails, the database does not exist? -> -> the BlastMapping.__init__() calls self.checkdb(), which checks all the -> locations in self.blastIndexDirs looking for the blast index files. -> If they are found, it sets self.blastReady = True. In that case, -> self.formatdb() will not ever be called. -> -> > sounds good. I'll put that in and submit a patch. -> -> Great!
See: http://github.com/ctb/pygr/tree/formatdb_fail --titus -- C. Titus Brown, c...@msu.edu --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "pygr-dev" group. To post to this group, send email to pygr-dev@googlegroups.com To unsubscribe from this group, send email to pygr-dev+unsubscr...@googlegroups.com For more options, visit this group at http://groups.google.com/group/pygr-dev?hl=en -~----------~----~----~----~------~----~------~--~---
