sqlgraph.SQLTableClustered class invokes SQLTable.keys() function and it consumes a lot of memory. One thing I don't understand is that instead of using SQLTable.clusterkey() function, it is using SQLTable.keys() function. Please let me know if I am wrong.
On Wed, Jul 15, 2009 at 11:14 AM, Namshin Kim <[email protected]> wrote: > Hi, > > I found where annotation_hg18_megatest consumes almost all of the memory. > In mysqlannot_test(), megatest uses all the memory in following process. > Does anybody have an idea what is going on? > > snp_db = seqdb.AnnotationDB(snp_slices, hg18, sliceAttrDict = > dict(id = 'chromosome', gene_id = 'name', > snp_id = 'snp_id', score = 'score', > ref_NCBI = 'ref_NCBI', ref_UCSC = 'ref_UCSC', > observed = 'observed', molType = > 'molType', myClass = 'myClass', myValid = 'myValid', > avHet = 'avHet', avHetSE = 'avHetSE', > myFunc = 'myFunc', locType = 'locType', > myWeight = 'myWeight')) > > Yours, > Namshin Kim > > > > On Tue, Jul 14, 2009 at 5:36 AM, C. Titus Brown <[email protected]> wrote: > >> >> On Mon, Jul 13, 2009 at 01:28:10PM -0700, Christopher Lee wrote: >> -> Hi Namshin, Marek, >> -> is there a way we can incorporate a measurement of memory usage into >> -> the megatests? This is a critical measure of performance, and we need >> -> an immediate warning if changes introduced to master break proper >> -> cache freeing. At this point, it'll be a pain in the ass trying to >> -> track down when cache clearing was broken, if it is now broken as >> -> Namshin says. >> >> You could also query the gc for # of objects, etc. and place that in the >> assertions; it shouldn't change dramatically. >> >> Or artificially limit the amount of available memory with ulimit. >> >> --titus >> >> >> >> > --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "pygr-dev" group. To post to this group, send email to [email protected] To unsubscribe from this group, send email to [email protected] For more options, visit this group at http://groups.google.com/group/pygr-dev?hl=en -~----------~----~----~----~------~----~------~--~---
