On Fri, Jul 17, 2009 at 10:04 AM, Christopher Lee <[email protected]>wrote:
> > > On Jul 16, 2009, at 5:46 PM, Namshin Kim wrote: > > > Python2.4 and latest Pyrex give errors, not different version of > > output. Correct output (Collection and SQLTableClustered versions > > are same) is from Python2.5 and latest Pyrex. I think we may have to > > downgrade Pyrex if we want to use Python2.4. > > By "errors" do you mean it raises a Python exception? Or do you mean > the results are incorrect? > I mean NLMSA returns fake objects with negative coordinates. It happens only when I run megatest by Python2.4 and latest Pyrex. > > > > > > > By the way, could you possibly push all the changes you've recently > > made to megatest code to GitHub, for the benefit of those without > > direct access to our new megatest machine? > > > > I had updated two database tables (pygr_snp126_hg18 and > > pygr_snp126_chrY_hg18) and three pre-calculated output files. The > > only thing we need to update is to get rid of "sys.exit" in > > annotation_hg18_megatest.py. I will update downloadable files in > http://biodb.bioinformatics.ucla.edu > > . > > Namshin, if any changes in megatest source code are involved, please > make them in a new git branch (presumably starting from Marek's > megatests branch) and push them to your github repository. If you > have questions about using git to do this see our cheat-sheet: > http://code.google.com/p/pygr/wiki/UsingGit > OK. I will. I am now spending more time on pygr than before. > > -- Chris > > > > --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "pygr-dev" group. To post to this group, send email to [email protected] To unsubscribe from this group, send email to [email protected] For more options, visit this group at http://groups.google.com/group/pygr-dev?hl=en -~----------~----~----~----~------~----~------~--~---
