Could someone post a simple example of using two AnnotationDBs to create a Graph? I'm really stuck as to what sourceDB, targetDB, edgeDB should be set to, and what objects or ids should be used to create the graph nodes and edges. For example, when I add nodes to the graph with sourceDB and targetDB are AnnotationDBs, I usually get AttributeErrors that an int object has no 'id' attribute (obviously).
For example: http://kmdaily.pastebin.com/m34fdb794 Then, I get: UG[hit][curr_feature['feature']] = curr_feature['distance'] File "/home/dock/shared_libraries/lx64/pkgs/pythonsandbox/2.6.2/lib/ python2.6/site-packages/pygr-0.8.0-py2.6-linux-x86_64.egg/pygr/ mapping.py", line 608, in __setitem__ = self.graph.pack_edge(edgeInfo) File "/home/dock/shared_libraries/lx64/pkgs/pythonsandbox/2.6.2/lib/ python2.6/site-packages/pygr-0.8.0-py2.6-linux-x86_64.egg/pygr/ mapping.py", line 423, in pack_id return obj.id AttributeError: 'int' object has no attribute 'id' Thanks! --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "pygr-dev" group. To post to this group, send email to [email protected] To unsubscribe from this group, send email to [email protected] For more options, visit this group at http://groups.google.com/group/pygr-dev?hl=en -~----------~----~----~----~------~----~------~--~---
