On Thu, Jul 23, 2009 at 10:43:49AM -0700, Marek Szuba wrote:
-> On Wed, 22 Jul 2009 14:14:21 -0700
-> "C. Titus Brown" <[email protected]> wrote:
-> 
-> > I would like to have someone (you?) pick the dates well in advance,
-> > and then we can just stick to 'em, barring major bugs.
->
-> Makes sense... I guess we'll add the dates to the roadmap wiki, too.

ok, thanks, that would help me keep things straight!

-> > buildbot is client-server so we can certainly include a buildbot view
-> > of the megatest results, with the buildslave running at UCLA.  Let me
-> > know if you want to try this out and we can help you configure etc.
->
-> That would be pretty useful, in my view! Yesterday I installed (from
-> source) all the required Python versions and Pygr dependencies on the
-> megatest machine and the files required by megatests are already there,
-> so I guess we can now proceed to setting up a buildslave.

Yep!  Contact Owen Pierce <[email protected]> directly and ask him to
add a buildslave entry into the server for you; he should be able to
help you out with specific buildslave settings as well.  Let's start with
'echo hello, world' and move on from there ;)

-> By the way, I've run standard tests on that box with different Python
-> versions and there are issues with 2.3 - the bsddb module cannot be
-> imported (it is there but the underlying shared library hasn't been
-> built for some reason), moreover one of the tests fails:

[ ... ]

The bsddb problem is something I ran into; I had to jump through some
hoops to get it to compile on 2.3.  Ping me if you have trouble and I'll
track down exactly what I did.

-> ======================================================================
-> FAIL: test_seqInfoDict (seqdb_test.PrefixUnionDict_Test)
-> ----------------------------------------------------------------------
-> Traceback (most recent call last):
->   File "/tmp/pygr/tests/seqdb_test.py", line 650, in test_seqInfoDict
->     assert (ii1.id, ii1.db) == (s1i.id, s1i.db)
-> AssertionError
-> 
-> I recall your set-up also suffered from initial problems with 2.3, does
-> any of this look familiar? If I have to work on fixing this, I'd like to
-> make sure it is not a known problem.

This second problem is odd and doesn't smell like a 2.3 issue.

Can I give you an account on lyorn, our Linux server?  Then you can try
running things with our python2.x installs, too.  Just let me know
off-list what username you prefer.

cheers,
--titus
-- 
C. Titus Brown, [email protected]

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