Hi Titus, I have one question about your silencio commit in blast.py, which always blocks display of stderr output from formatdb. This is the only change in the silencio branch that modifies behavior of Pygr itself rather than just of the test suite. Given that formatdb is prone to failure, I'm not sure Pygr should suppress formatdb's error messages so completely as this commit would impose. If I understood right, you made this change mainly to hide error messages during the test_formatdb_fail() test. I propose the following compromise:
- add a new option showFormatdbMessages to BlastMapping(). By default this would be True. Setting it to False would activate your redirection code that hides the stdout / stderr output from formatdb. - test_formatdb_fail() would invoke this option to prevent formatdb error messages from being displayed during the test. What do you think? -- Chris --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "pygr-dev" group. To post to this group, send email to [email protected] To unsubscribe from this group, send email to [email protected] For more options, visit this group at http://groups.google.com/group/pygr-dev?hl=en -~----------~----~----~----~------~----~------~--~---
