Hello Pygr people,
I have just noticed it is no longer possible to run tests not from
inside the tests/ directory, as it causes blast_test to fail three
times on not being to open the file 'gapping.fa'. This has been caused
by said file being opened as "'data/gapping.fa'" rather than
"testutil.datafile('gapping.fa')". I have modified blast_test.py to use
the latter approach:
http://github.com/mkszuba/pygr/commit/d18a0ca82d81864ee8ab600c4d153609da7fdd19
('gapping_path' branch)
Unfortunately, the three tests still fail when called from outside
tests/ - this time gapping.fa.seqlen cannot be found. I'll look into
the problem and keep you updated.
--
MS
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