Hi! Running pygr 0.8 beta 64bit python 2.6.2
Contrast: ~ $ rm ~/.pygr_data ~ $ export WORLDBASEPATH=.,~,http://biodb2.bioinformatics.ucla.edu: 5000 ~ $ ipython In [1]: from pygr import worldbase In [2]: dm3 = worldbase.Bio.Seq.Genome.DROME.dm3() In [3]: dm3 Out[3]: <XMLRPCSequenceDB 'type'> Vs: ~ $ rm ~/.pygr_data ~ $ export WORLDBASEPATH=.,~,http://biodb.bioinformatics.ucla.edu: 5000 ~ $ ipython In [1]: from pygr import worldbase In [2]: dm3 = worldbase.Bio.Seq.Genome.DROME.dm3() INFO downloader.download_unpickler: Beginning download of http://biodb.bioinformatics.ucla.edu/GENOMES/dm3/chromFa.tar.gz to / home/wbiesing/dm3.tar.gz... INFO downloader.download_monitor: downloaded 5144576 bytes (10.0%)... INFO downloader.download_monitor: downloaded 10289152 bytes (20.0%)... --------------------------------------------------------------------------- KeyboardInterrupt Traceback (most recent call last) Why is the biodb server causing the genome to be downloaded while biodb2 isn't? biodb's behavior seems odd. --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "pygr-dev" group. To post to this group, send email to [email protected] To unsubscribe from this group, send email to [email protected] For more options, visit this group at http://groups.google.com/group/pygr-dev?hl=en -~----------~----~----~----~------~----~------~--~---
