On Wed, 11 Nov 2009 12:34:00 -0800 "C. Titus Brown" <c...@msu.edu> wrote:
> > 1. Can we live without original Ensembl exon IDs? > I can ;). But I don't understand why we would need to. Well, if we absolutely and positively NEED Ensembl exon IDs then the whole idea of interfacing with Ensembl via UCSC is useless and we need to get back to talking directly to Ensembl. > Yes, it should be easy to do. I'm not entirely sure what the best > mechanism will be though; is the problem that individual exon info > will have to be extracted from the blob dynamically? Pretty much... > I could imagine an ensGene wrapper object with an exons list-like > object that in turn dynamically pulls exon information out of the > blobs, e.g. code like this [...] > Is this the sort of thing we need? Yup, that's it - possibly accompanied by caching of already-located exons. -- MS --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "pygr-dev" group. To post to this group, send email to pygr-dev@googlegroups.com To unsubscribe from this group, send email to pygr-dev+unsubscr...@googlegroups.com For more options, visit this group at http://groups.google.com/group/pygr-dev?hl=en -~----------~----~----~----~------~----~------~--~---
