On Thu, Feb 11, 2010 at 03:14:26AM +0100, Marek Szuba wrote: > I've just uploaded the first version of a tutorial describing the use of > the new UCSC-Ensembl Pygr interface, to my 'ucsc_ensembl' GitHub branch: > > http://github.com/mkszuba/pygr/commit/8cf1c9b2d3d8eb7b0bca929ca46bc9a2a87092fa > > Please let me know what you think, as usual.
Hi Marek, very neat! I will probably have additional comments when I try using it myself, but in the meantime I've made some minor corrections and pushed them to my branch 'ucsc_tutorial_patches', http://github.com/ctb/pygr/commits/ucsc_tutorial_patches/ My main comment is that I would personally appreciate less verbose and complicated names; for example, from pygr.apps.ucsc_ensembl_annot import UCSCEnsemblInterface could be from pygr.apps.ucsc_ensembl import Interface which would be easier to type. On the flip side, I dislike abbreviations, so e.g. iface.trans_db could be iface.transcript_db which would be a bit easier to read. I know, minor stuff, but you asked! cheers, --titus -- C. Titus Brown, c...@msu.edu -- You received this message because you are subscribed to the Google Groups "pygr-dev" group. To post to this group, send email to pygr-...@googlegroups.com. To unsubscribe from this group, send email to pygr-dev+unsubscr...@googlegroups.com. For more options, visit this group at http://groups.google.com/group/pygr-dev?hl=en.
