Is the server down or is it a metabase issue?
$ export WORLDBASEPATH=http://biodb2.bioinformatics.ucla.edu:5000

In [1]: from pygr import worldbase
In [2]: worldbase.Bio.Seq.Genome.MOUSE.mm9()

WARNING: error accessing metabase http://biodb2.bioinformatics.ucla.edu:5000.
Continuing...
Traceback (most recent call last):
  File "setup/SetupMotifs_mm9.py", line 9, in <module>
    genome = worldbase('Bio.Seq.Genome.MOUSE.mm9', download=True)
  File "/usr/local/lib/python2.6/dist-packages/pygr/metabase.py", line
1460, in __call__
    return self._mdb(resID, *args, **kwargs)
  File "/usr/local/lib/python2.6/dist-packages/pygr/metabase.py", line
777, in __call__
    for objdata, docstr in self.find_resource(resID, download):
  File "/usr/local/lib/python2.6/dist-packages/pygr/metabase.py", line
1047, in find_resource
    % resID)
pygr.metabase.WorldbaseNotFoundError: 'unable to find
Bio.Seq.Genome.MOUSE.mm9 in WORLDBASEPATH'



and another attempt resulted in:

Traceback (most recent call last):
  File "/usr/local/lib/python2.6/dist-packages/pygr/metabase.py", line
1085, in update
    self, **mdbArgs)
  File "/usr/local/lib/python2.6/dist-packages/pygr/metabase.py", line
915, in __init__
    storage = XMLRPCMetabase(dbpath, self, **kwargs)
  File "/usr/local/lib/python2.6/dist-packages/pygr/metabase.py", line
335, in __init__
    self.server = get_connection(url, 'index')
  File "/usr/local/lib/python2.6/dist-packages/pygr/coordinator.py",
line 94, in __call__
    return s[name] # GET THE REQUESTED OBJECT PROXY FROM THE SERVER
  File "/usr/local/lib/python2.6/dist-packages/pygr/coordinator.py",
line 75, in __getitem__
    methodDict = self.server.objectInfo(name)
  File "/usr/lib/python2.6/xmlrpclib.py", line 1199, in __call__
    return self.__send(self.__name, args)
  File "/usr/lib/python2.6/xmlrpclib.py", line 1489, in __request
    verbose=self.__verbose
  File "/usr/lib/python2.6/xmlrpclib.py", line 1237, in request
    errcode, errmsg, headers = h.getreply()
  File "/usr/lib/python2.6/httplib.py", line 1060, in getreply
    response = self._conn.getresponse()
  File "/usr/lib/python2.6/httplib.py", line 986, in getresponse
    response.begin()
error: [Errno 104] Connection reset by peer

WARNING: error accessing metabase http://biodb2.bioinformatics.ucla.edu:5000.
Continuing...
---------------------------------------------------------------------------
WorldbaseNotFoundError                    Traceback (most recent call
last)

/home/wbiesing/projects/chipSeq/python/<ipython console> in <module>()

/usr/local/lib/python2.6/dist-packages/pygr/metabase.pyc in
__call__(self, *args, **kwargs)
   1415     def __call__(self, *args, **kwargs):
   1416         'construct the requested resource'
-> 1417         return self._mdb(self._path, *args, **kwargs)
   1418
   1419     def __setattr__(self, name, obj):

/usr/local/lib/python2.6/dist-packages/pygr/metabase.pyc in
__call__(self, resID, debug, download, *args, **kwargs)
    775         try: # finally... TO RESTORE debug STATE EVEN IF
EXCEPTION OCCURS.
    776             self.update(debug=self.debug,
keepCurrentPath=True) # load if empty
--> 777             for objdata, docstr in self.find_resource(resID,
download):
    778                 try:
    779                     obj = self.load(resID, objdata, docstr)

/usr/local/lib/python2.6/dist-packages/pygr/metabase.pyc in
find_resource(self, resID, download)
   1045                 pass
   1046         raise WorldbaseNotFoundError('unable to find %s in
WORLDBASEPATH'
-> 1047                                      % resID)
   1048
   1049     def get_worldbase_path(self):

WorldbaseNotFoundError: 'unable to find Bio.Seq.Genome.MOUSE.mm9 in
WORLDBASEPATH'

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