Thanks for the quick response.

I tried --onedir mode as you suggested for both my complete program and the 
minimal example that reproduces the error message.  After creating the 
executable in --onedir mode for the complete program I received the 
following error when running the executable:

LOADER: executable is C:\PYINST~1\DEPLOY~1\dist\DEPLOY~1\deployed-driver.exe
LOADER: homepath is C:\PYINST~1\DEPLOY~1\dist\DEPLOY~1
LOADER: _MEIPASS2 is NULL
LOADER: archivename is 
C:\PYINST~1\DEPLOY~1\dist\DEPLOY~1\deployed-driver.exe
LOADER: No need to extract files to run; setting extractionpath to homepath
LOADER: Already in the child - running user's code.
LOADER: manifestpath: 
C:\PYINST~1\DEPLOY~1\dist\DEPLOY~1\deployed-driver.exe.man
ifest
LOADER: Activation context created
LOADER: Activation context activated
LOADER: Python library: C:\PYINST~1\DEPLOY~1\dist\DEPLOY~1\python27.dll
LOADER: Manipulating evironment
LOADER: PYTHONPATH=C:\PYINST~1\DEPLOY~1\dist\DEPLOY~1
LOADER: PYTHONHOME=C:\PYINST~1\DEPLOY~1\dist\DEPLOY~1
LOADER: Manipulating Python's sys.path
LOADER: importing modules from CArchive
LOADER: extracted struct
LOADER: extracted pyi_os_path
LOADER: extracted pyi_archive
LOADER: extracted pyi_importers
LOADER: Installing import hooks
LOADER: out00-PYZ.pyz
LOADER: Running scripts
Traceback (most recent call last):
  File "<string>", line 24, in <module>
  File "C:\pyinstaller-develop\PyInstaller\loader\pyi_importers.py", line 
268, i
n load_module
    exec(bytecode, module.__dict__)
  File 
"C:\pyinstaller-develop\deployed-driver\build\pyi.win32\deployed-driver\o
ut00-PYZ.pyz\Detectors.MultiDetector", line 6, in <module>
  File "C:\pyinstaller-develop\PyInstaller\loader\pyi_importers.py", line 
268, i
n load_module
    exec(bytecode, module.__dict__)
  File 
"C:\pyinstaller-develop\deployed-driver\build\pyi.win32\deployed-driver\o
ut00-PYZ.pyz\sklearn.svm", line 13, in <module>
  File "C:\pyinstaller-develop\PyInstaller\loader\pyi_importers.py", line 
268, i
n load_module
    exec(bytecode, module.__dict__)
  File 
"C:\pyinstaller-develop\deployed-driver\build\pyi.win32\deployed-driver\o
ut00-PYZ.pyz\sklearn.svm.classes", line 3, in <module>
  File "C:\pyinstaller-develop\PyInstaller\loader\pyi_importers.py", line 
268, i
n load_module
    exec(bytecode, module.__dict__)
  File 
"C:\pyinstaller-develop\deployed-driver\build\pyi.win32\deployed-driver\o
ut00-PYZ.pyz\sklearn.linear_model", line 15, in <module>
  File "C:\pyinstaller-develop\PyInstaller\loader\pyi_importers.py", line 
268, i
n load_module
    exec(bytecode, module.__dict__)
  File 
"C:\pyinstaller-develop\deployed-driver\build\pyi.win32\deployed-driver\o
ut00-PYZ.pyz\sklearn.linear_model.least_angle", line 24, in <module>
  File "C:\pyinstaller-develop\PyInstaller\loader\pyi_importers.py", line 
268, i
n load_module
    exec(bytecode, module.__dict__)
  File 
"C:\pyinstaller-develop\deployed-driver\build\pyi.win32\deployed-driver\o
ut00-PYZ.pyz\sklearn.cross_validation", line 25, in <module>
  File "C:\pyinstaller-develop\PyInstaller\loader\pyi_importers.py", line 
268, i
n load_module
    exec(bytecode, module.__dict__)
  File 
"C:\pyinstaller-develop\deployed-driver\build\pyi.win32\deployed-driver\o
ut00-PYZ.pyz\sklearn.metrics", line 32, in <module>
  File "C:\pyinstaller-develop\PyInstaller\loader\pyi_importers.py", line 
268, i
n load_module
    exec(bytecode, module.__dict__)
  File 
"C:\pyinstaller-develop\deployed-driver\build\pyi.win32\deployed-driver\o
ut00-PYZ.pyz\sklearn.metrics.scorer", line 25, in <module>
  File "C:\pyinstaller-develop\PyInstaller\loader\pyi_importers.py", line 
268, i
n load_module
    exec(bytecode, module.__dict__)
  File 
"C:\pyinstaller-develop\deployed-driver\build\pyi.win32\deployed-driver\o
ut00-PYZ.pyz\sklearn.metrics.cluster", line 8, in <module>
  File "C:\pyinstaller-develop\PyInstaller\loader\pyi_importers.py", line 
268, i
n load_module
    exec(bytecode, module.__dict__)
  File 
"C:\pyinstaller-develop\deployed-driver\build\pyi.win32\deployed-driver\o
ut00-PYZ.pyz\sklearn.metrics.cluster.supervised", line 19, in <module>
  File "C:\pyinstaller-develop\PyInstaller\loader\pyi_importers.py", line 
404, i
n load_module
    module = imp.load_module(fullname, fp, filename, self._c_ext_tuple)
  File "expected_mutual_info_fast.pyx", line 1, in init 
sklearn.metrics.cluster.
expected_mutual_info_fast 
(sklearn\metrics\cluster\expected_mutual_info_fast.c:4
869)
ImportError: No module named lgamma
LOADER: RC: -1 from deployed-driver
LOADER: OK.
LOADER: Deactivating activation context
LOADER: Releasing activation context
LOADER: Done
LOADER: Cleaning up Python interpreter.

I was able to resolve this by adding an explicit import for lgamma to 
deployed-driver.py.  However, when I transferred the directory produced by 
Pyinstaller to my virtual machine and attempted to run the executable, I 
received the same error message that was included in my original post.

I also ran Pyinstaller in --onedir mode for my minimal example and did not 
have any difficulty running the executable in my build environment, but I 
received the same WindowsError after transferring the directory produced by 
Pyinstaller to the virtual machine and attempting to run the executable.

Here are the contents of the dist\ directory:

 Directory of 
C:\pyinstaller-develop\SklearnMinimalExample\dist\SklearnMinimalEx
ample

03/06/2013  07:37 AM    <DIR>          .
03/06/2013  07:37 AM    <DIR>          ..
04/10/2012  11:31 PM            59,904 bz2.pyd
03/06/2013  07:37 AM    <DIR>          include
03/01/2013  08:28 AM             1,857 Microsoft.VC90.CRT.manifest
03/01/2013  08:28 AM           224,768 msvcm90.dll
03/01/2013  08:28 AM           568,832 msvcp90.dll
03/01/2013  08:28 AM           655,872 msvcr90.dll
02/09/2013  06:05 PM         1,313,415 numpy.core.multiarray.pyd
02/09/2013  06:05 PM           174,793 numpy.core.scalarmath.pyd
02/09/2013  06:05 PM           410,944 numpy.core.umath.pyd
02/09/2013  06:05 PM         2,222,455 numpy.core._dotblas.pyd
02/09/2013  06:06 PM            46,383 numpy.fft.fftpack_lite.pyd
02/09/2013  06:06 PM            41,019 numpy.lib._compiled_base.pyd
02/09/2013  06:06 PM         2,382,083 numpy.linalg.lapack_lite.pyd
02/09/2013  06:06 PM           521,885 numpy.random.mtrand.pyd
04/10/2012  11:31 PM           103,424 pyexpat.pyd
04/10/2012  11:31 PM         2,303,488 python27.dll
10/27/2012  09:20 AM           110,080 pywintypes27.dll
02/16/2013  08:55 AM           180,355 scipy.io.matlab.mio5_utils.pyd
02/16/2013  08:55 AM            48,516 scipy.io.matlab.mio_utils.pyd
02/16/2013  08:55 AM            75,662 scipy.io.matlab.streams.pyd
02/16/2013  08:56 AM           108,705 scipy.linalg.calc_lwork.pyd
02/16/2013  08:56 AM            59,065 scipy.linalg._cblas.pyd
02/16/2013  08:56 AM         2,485,538 scipy.linalg._clapack.pyd
02/16/2013  08:56 AM         2,720,377 scipy.linalg._fblas.pyd
02/16/2013  08:56 AM         6,897,971 scipy.linalg._flapack.pyd
02/16/2013  08:56 AM         2,208,558 scipy.linalg._flinalg.pyd
02/16/2013  09:01 AM            89,564 
scipy.sparse.csgraph._min_spanning_tree.p
yd
02/16/2013  09:01 AM           233,527 
scipy.sparse.csgraph._shortest_path.pyd
02/16/2013  09:01 AM           145,501 scipy.sparse.csgraph._tools.pyd
02/16/2013  09:01 AM           168,478 scipy.sparse.csgraph._traversal.pyd
02/16/2013  08:57 AM         2,822,178 
scipy.sparse.linalg.dsolve._superlu.pyd
02/16/2013  08:58 AM         4,012,276 
scipy.sparse.linalg.eigen.arpack._arpack.
pyd
02/16/2013  08:57 AM           928,767 
scipy.sparse.linalg.isolve._iterative.pyd

02/16/2013  09:00 AM         1,641,587 scipy.sparse.sparsetools._bsr.pyd
02/16/2013  08:59 AM           675,572 scipy.sparse.sparsetools._coo.pyd
02/16/2013  08:59 AM         1,131,421 scipy.sparse.sparsetools._csc.pyd
02/16/2013  09:00 AM           538,950 scipy.sparse.sparsetools._csgraph.pyd
02/16/2013  08:59 AM         1,503,879 scipy.sparse.sparsetools._csr.pyd
02/16/2013  09:00 AM           571,548 scipy.sparse.sparsetools._dia.pyd
02/16/2013  09:01 AM           229,202 scipy.spatial.ckdtree.pyd
02/16/2013  09:01 AM         1,315,873 scipy.spatial.qhull.pyd
02/16/2013  09:01 AM            46,248 scipy.spatial._distance_wrap.pyd
02/16/2013  09:02 AM         1,483,700 scipy.special.specfun.pyd
02/16/2013  09:02 AM         2,551,131 scipy.special._ufuncs.pyd
02/16/2013  09:02 AM           137,879 scipy.special._ufuncs_cxx.pyd
04/10/2012  11:31 PM             9,728 select.pyd
03/05/2013  08:26 PM            55,808 
sklearn.metrics.cluster.expected_mutual_i
nfo_fast.pyd
03/05/2013  08:25 PM           131,072 sklearn.metrics.pairwise_fast.pyd
03/05/2013  08:25 PM            14,336 sklearn.utils.lgamma.pyd
03/05/2013  08:25 PM            56,832 sklearn.utils.murmurhash.pyd
03/05/2013  08:25 PM            66,048 sklearn.utils.sparsefuncs.pyd
03/05/2013  08:25 PM            37,888 sklearn.utils.weight_vector.pyd
03/05/2013  08:24 PM            10,752 
sklearn.__check_build._check_build.pyd
03/06/2013  07:37 AM         3,287,022 SklearnMinimalExample.exe
03/06/2013  07:37 AM               488 SklearnMinimalExample.exe.manifest
04/10/2012  11:31 PM           686,592 unicodedata.pyd
10/27/2012  09:21 AM            98,816 win32api.pyd
10/27/2012  09:20 AM            25,600 win32pdh.pyd
10/27/2012  09:20 AM            24,064 win32pipe.pyd
04/10/2012  11:31 PM            74,240 _ctypes.pyd
04/10/2012  11:31 PM           285,184 _hashlib.pyd
04/10/2012  11:31 PM            23,552 _multiprocessing.pyd
04/10/2012  11:31 PM            40,960 _socket.pyd
04/10/2012  11:31 PM           721,920 _ssl.pyd
              63 File(s)     51,804,132 bytes

 Directory of 
C:\pyinstaller-develop\SklearnMinimalExample\dist\SklearnMinimalEx
ample\include

03/06/2013  07:37 AM    <DIR>          .
03/06/2013  07:37 AM    <DIR>          ..
04/10/2012  11:18 PM            21,529 pyconfig.h
               1 File(s)         21,529 bytes

     Total Files Listed:
              64 File(s)     51,825,661 bytes
               5 Dir(s)  101,922,615,296 bytes free

As far as I can tell there aren't any missing files.

On Wednesday, March 6, 2013 5:05:31 AM UTC-5, Martin Z wrote:
>
> [email protected] <javascript:> píše v Út 05. 03. 2013 v 18:01 
> -0800: 
> > python pyinstaller.py --onefile --debug path\to\code 
> > \deployed-driver.py 
>
> > Can anyone suggest a reason why my executable is not running properly 
> > in the virtual machine?  Let me know if you need any additional 
> > information to help identify the problem. 
>
> First try --onedir mode and ensure all files are bundled properly. 
>
>

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