That setup should fail even without PyInstaller because mypkg.mymod is
never imported.
# This initialises mypkg.__init__ only.
import mypkg
if __name__ == "__main__":
# So even if mymod has been collected by PyInstaller, it won't have been
loaded
# and set as an attribute of `mypkg`.
mypkg.mymod.myfunc()
Possibly what your after is the following line in __init__.py?
from . import mymod
That way, initialising mypkg (using import mypkg) will implicitly load mymod
and you can safely use mypkg.mymod.myfunc(). Alternatively you can just import
mypkg.mymod.
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