In case anyone is interested, here is how you can do it:
import sys
import os
import sqlalchemy as sa
from paste.deploy import appconfig, config, CONFIG
from myproject.config.environment import load_environment
config_file = sys.argv[1] #development.ini for example
#script needs to be in the same directory as the ini file for this
line to work.
here_dir = os.path.dirname(os.path.abspath(__file__))
conf = appconfig('config:' + config_file, relative_to=here_dir)
load_environment(conf.global_conf, conf.local_conf)
import myproject.model as model
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