"DeLano, Warren" wrote: > > From: Leslie Hall [mailto:hal...@uthscsa.edu] > > > I have just started using PyMol and had a question about > > moving selected > > objects in an animation. > > Here is basically what I want to do. > > > > 1. Load two separate pdb files. > > 2. Be able to move the two molecules independently of each other. > > 3. Show a conformational change in one of the molecules. > > 4. Move the two molecules independently and show them docking with > > each other. > > Leslie, > > Are you trying to perform these changes manually using the mouse, or > automatically using the Python API? The manual approach is documented > in the manual, but the Python API approach was neither documented nor > complete in 0.68. > > It is complete now in version (0.73) but still isn't well documented. > If you provide some more details about how you're planning on doing > this, I could probably post a couple examples for you.
Warren, I am trying to make these changes automatically. Essentially, I would like to have a script to make a movie where; First, I want to load pdb files that contain four molecules (A, A, B, and B). Initially, I what to hide all four molecules. Then show the dimer AA in the center of the screen. Have this dimer rotate around X. Then show a conformational change in this dimer where you hold one of the molecules (A) stationary, while you rotate the other molecule A in X by 100 degrees. After this is done, I then want to show one molecules of B on the left side and the other molecule B on the right side of the dimer of AA. Finally I want to show the molecule B's moving and docking with the dimer (AA) in its new conformation. Also, is it posible to make this movie showing electrostatic surface? Les
