Scott, isomesh msh1, map1, 1.5, myobject, carve=2.1
The postfix "carve=2.1" will trim density which is more than 2.1 A from myobject. You may want to play around with the exact cutoff... Cheers, Warren > -----Original Message----- > From: Scott Classen [mailto:clas...@uclink.berkeley.edu] > Sent: Friday, September 20, 2002 3:11 PM > To: pymol-users@lists.sourceforge.net > Subject: [PyMOL] electron density maps > > > Hello fellow PyMOL users, > I am trying to display a ccp4 map over just a ligand. I have > successfully read in the map and displayed it around the ligand with: > > isomesh msh1, map1, 1.5, myobject > > but the map has bits and peices of the surrounding sidechains. > Is there a way to only display the map around my ligand? > Thanks, > Scott > > > > ============================================== > Scott Classen > clas...@uclink4.berkeley.edu > University of California, Berkeley > Department of Molecular & Cell Biology > 229 Stanley Hall #3206 > Berkeley, CA 94720-3206 > LAB 510.643.9491 > FAX 510.643.9290 > ============================================== > > > > ------------------------------------------------------- > This sf.net email is sponsored by:ThinkGeek > Welcome to geek heaven. > http://thinkgeek.com/sf > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users >
