By default, PyMOL doesn't surface PDB HETATMs. To surface all atoms,
set surface_mode=1 To surface all atoms except hydrogens, set surface_mode=2 Cheers, Warren > -----Original Message----- > From: Kersey Black [mailto:kbl...@jsd.claremont.edu] > Sent: Wednesday, October 30, 2002 3:09 PM > To: pymol-users@lists.sourceforge.net > Cc: Kersey Black > Subject: [PyMOL] How to get a suurface on small molecule in > active site? > > > Hi Pymolers, > > I am trying to show a surface on a small molecule in the > active site. > I can create surfaces on protein residues without any problem, but I > can not get a surface around the small organic structure. I > have tried > this on an SGI and using the 0.84beta on OS X. > I am obviously missing something. Any help out there would be great. > > After loading the hapten, I try things like ... > show surface, hap > set transparency=0.5, hap > But I do not get a surface, with or without the transparency > > Cheers, > > Kersey > > > > ------------------------------------------------------- > This sf.net email is sponsored by: Influence the future > of Java(TM) technology. Join the Java Community > Process(SM) (JCP(SM)) program now. > http://ads.sourceforge.net/cgi-bin/redirect.pl?sunm0004en > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users >
