I know it seems like every other question is on this subject but..... I saw from an earlier message the following statement from Dr. DeLano
PyMOL's fitting abilities are improving: the upcoming version (v0.80) will have the ability to do an on-the-fly sequence-alignment followed by an optimized structure alignment, saving considerable time and hassle. Has this been implemented (I'm running the latest version 0.86) I have 2 proteins that are identical, but for reasons of no great interest, have different numbering schemes. I have the documentation on the align command, but it doesn't work (malformed selection) Any help is appreciated..... Mike Ford
