Kevin,
It looks to me like you are missing Numeric Python. Either you need to
remove the _PYMOL_NUMPY option from the Rules.make, or you need Numpy
installed. There is likely a Fink package which contains it, but I suspect
this dependency may have been missed in the creation of the Fink PyMOL package.
A quick workaround would be to remove the _PYMOL_NUMPY define from the
PyMOL Rules.make file.
Cheers,
Warren
--
mailto:war...@sunesis.com
Warren L. DeLano, Ph.D.
Informatics Manager
Sunesis Pharmaceuticals, Inc.
341 Oyster Point Blvd.
S. San Francisco, CA 94080
(650)-266-3606 FAX:(650)-266-3501
> -----Original Message-----
> From: Kevin Gardner [mailto:kevin.gard...@utsouthwestern.edu]
> Sent: Tuesday, March 18, 2003 10:59 AM
> To: pymol-users@lists.sourceforge.net
> Subject: [PyMOL] fink install fail: pymol-0.86-4
>
>
> Hi all:
> I'll continue on a thread from a couple of weeks ago, re: failed
> fink-based installs of pymol over the past month or so. Here's the
> machine setup:
>
> - attempting to install pymol-0.86-4 onto OS 10.2.4
> - python (2.3a2-1), python22 (2.2.2-4) and python22-shlibs
> (2.2.4) all installed
> - running Apple's X11 (v0.2 and now 0.3) w/SDK installed,
> other X programs compiling OK
>
> Output from the build attached below --- anyone have any insights
> here?
>
> Thanks,
> Kevin
>
> ------
>
> cd pyopengl;make
> cc -ffast-math -no-cpp-precomp -g -I/sw/include
> -I/sw/include/python2.2
> -I/usr/X11R6/include -D_HAVE_LIBPNG -D_PYMOL_MODULE -D_PYMOL_NUMPY
> -DHAVE_ARRAYOBJECT_H -c _glu_nummodule.c -DPythonTypes
> In file included from _glu_nummodule.c:8:
> _glumodule.c: In function `py_glu_NewTess':
> _glumodule.c:346: warning: passing arg 3 of `gluTessCallback' from
> incompatible pointer type
> _glumodule.c:347: warning: passing arg 3 of `gluTessCallback' from
> incompatible pointer type
> _glumodule.c:348: warning: passing arg 3 of `gluTessCallback' from
> incompatible pointer type
> _glumodule.c:349: warning: passing arg 3 of `gluTessCallback' from
> incompatible pointer type
> _glumodule.c:351: warning: passing arg 3 of `gluTessCallback' from
> incompatible pointer type
> In file included from _glu_nummodule.c:8:
> _glumodule.c:637:33: Numeric/arrayobject.h: No such file or directory
> _glumodule.c: In function `py_glu_Build2DMipmaps':
> _glumodule.c:723: `PyArrayObject' undeclared (first use in
> this function)
> _glumodule.c:723: (Each undeclared identifier is reported only once
> _glumodule.c:723: for each function it appears in.)
> _glumodule.c:723: `ap' undeclared (first use in this function)
> _glumodule.c:741: parse error before ')' token
> _glumodule.c:744: parse error before ')' token
> make[2]: *** [_glu_nummodule.o] Error 1
> make[1]: *** [make-pyopengl] Error 2
> make: *** [.contrib] Error 2
> ### execution of make failed, exit code 2
> Failed: compiling pymol-0.86-4 failed
>
> --
> **********************************************************************
> Kevin Gardner, Ph.D. kevin.gard...@utsouthwestern.edu
> Asst. Professor, Dept. of Biochemistry, UT Southwestern Medical Center
> 214-648-8916/FAX: -8947
http://freedom7.swmed.edu
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