David,
I am experimenting with some new stuff along these lines which
will provide much greater control over what moves and what doesnt. For
the time being, try using the protect and deprotect commands to
control which atoms are subject to transformation.
Cheers,
Warren
--
mailto:war...@delanoscientific.com
Warren L. DeLano, Ph.D.
Principal
DeLano Scientific LLC
Voice (650)-346-1154
Fax (650)-593-4020
-----Original Message-----
From: pymol-users-ad...@lists.sourceforge.net
[mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of David A.
Horita
Sent: Thursday, May 08, 2003 12:20 PM
To: pymol-users@lists.sourceforge.net
Subject: [PyMOL] pkfrag
Hi,
Is there a way to explicitly control which atoms end up in pkfrag1 and
pkfrag2? Specifically, I'd like to be able to move/rotate fragments
which are made of multiple molecules or are internal loops. Using
pkbond or pkatom to break between fragments doesn't give me enough
control. Selecting and protecting atoms doesn't seem to help, in this
case.
Thanks,
Dave Horita
-----------------------------
David A. Horita, Ph.D.
Department of Biochemistry
Wake Forest University School of Medicine
Winston-Salem, NC 27157-1016
Tel: 336 713-4194
Fax: 336 716-7671
email: dhor...@wfubmc.edu
web: http://www.wfubmc.edu/biochem/faculty/Horita/
