> I'm new with Pymol and I would like your help in the following problem: > I have a receptor image that I want to emphasize the ligand in its interior.
I'm a big fan of transparent surfaces for this, e.g.: http://bioinfo.mbb.yale.edu/people/nat/mbp.mpg > Its a nonpeptidic ligand that I would like to increase the radius of the > sticks model. set stick_radius = 0.3 or something like that - I think the default is 0.25 or something like that. > I also would like to draw a plane connecting 4 atoms in one specific region > of the ligand. Use a CGO: http://pymol.sourceforge.net/html/S0500cgo.html What you'd really need is probably a triangle strip - the two triangles being the two haves of the quadrilateral object with the 4 atoms as vertices. ---------------------------------------------------------------------------- Nathaniel Echols Programmer n...@bioinfo.mbb.yale.edu Gerstein Lab 203-589-6765 Yale University ----------------------------------------------------------------------------
