> Is there a limitation to the number of atoms or subunits pymol can handle?
> I reset max_triangles from 10^6 to 10^7. Didn't change a thing.

Exactly how much memory does your computer have?  And what OS are you
running?  I've definitely crashed PyMOL before on a Linux system when I
tried to do things with huge structures like bacterial chaperonin.  It's
not that hard to run out of physical memory, or even to hit the
addressible memory limit.

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Nathaniel Echols                                                  Programmer
n...@bioinfo.mbb.yale.edu                                        Gerstein Lab
203-589-6765                                                 Yale University
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