I have installed the X-windows version of pymol (ver. 0.9) in mac.
The installation appeared fine, but when I started pymol, I saw the
following lines in the terminal with no external gui. I appreciate for
any suggestions.
/sw/lib/pymol/modules/pymol/__init__.py:300: RuntimeWarning: Python C
API version mismatch for module _cmd: This Python has API version 1012,
module _cmd has version 1011.
import _cmd
PyMOL(TM) Molecular Graphics System, Version 0.90.
Copyright (C) 1998-2003 by DeLano Scientific LLC.
All Rights Reserved.
Created by Warren L. DeLano, Ph.D.
Other Major Authors and Contributors:
Ralf W. Grosse-Kunstleve, Ph.D.
PyMOL is user-supported open-source software. Although most
versions
are freely available, PyMOL is not in the public domain.
If PyMOL is helpful in your work or study, then please volunteer
support for our ongoing campaign to create open and affordable
software
for molecular research.
Updates and other information can be found at
"http://www.pymol.org";.
Please cite PyMOL in publications and presentations:
Warren L. DeLano "The PyMOL Molecular Graphics System."
DeLano Scientific LLC, San Carlos, CA, USA. http://www.pymol.org
Enter "help" for a list of commands.
Enter "help <command-name>" for information on a specific command.
Hit ESC anytime to toggle between text and graphics.
/sw/lib/pymol/modules/pymol/__init__.py:172: RuntimeWarning: Python C
API version mismatch for module pcatch: This Python has API version
1012, module pcatch has version 1011.
_cmd.runpymol() # only returns if we are running pretend GLUT
/sw/lib/pymol/modules/pymol/xray.py:16: RuntimeWarning: Python C API
version mismatch for module sglite: This Python has API version 1012,
module sglite has version 1011.
import sglite
/sw/lib/pymol/modules/pymol/xray.py:16: RuntimeWarning: Python C API
version mismatch for module ExtensionClass: This Python has API version
1012, module ExtensionClass has version 1011.
import sglite
OpenGL based graphics front end:
GL_VENDOR: ATI Technologies Inc.
GL_RENDERER: ATI Radeon 9000 OpenGL Engine
GL_VERSION: 1.3 ATI-1.2.20
Traceback (most recent call last):
File "/sw/lib/pymol/modules/pymol/__init__.py", line 177, in exec_str
exec s in globals(),globals()
File "<string>", line 1, in ?
File "/sw/lib/pymol/modules/pymol/__init__.py", line 292, in
launch_gui
__import__(invocation.options.gui)
File "/sw/lib/pymol/modules/pmg_tk/__init__.py", line 22, in ?
from PMGApp import *
File "/sw/lib/pymol/modules/pmg_tk/PMGApp.py", line 18, in ?
from AbstractApp import AbstractApp
File "/sw/lib/pymol/modules/pmg_tk/AbstractApp.py", line 16, in ?
import Pmw
ImportError: No module named Pmw
Wataru Kagawa, Ph. D.
Special Postdoctoral Researcher
Protein Structure and Function Research Group
RIKEN (Physical and Chemical Research Institute)
W221, West Research Bldg.
1-7-22 Suehiro-cho, Tsurumi-ku
Yokohama, Japan 230-0045
tel. 045-503-9206
fax. 045-503-9201
